Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20080
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.26 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.26 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.26 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.26 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.3  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   9.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 LKKSLEQYFYCIFLFVLWWKICL 502
           +K++LEQ  Y I++FV  WK CL
Sbjct: 287 IKENLEQSRYFIYMFVSVWK-CL 308


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 LKKSLEQYFYCIFLFVLWWKICL 502
           +K++LEQ  Y I++FV  WK CL
Sbjct: 287 IKENLEQSRYFIYMFVSVWK-CL 308


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 LKKSLEQYFYCIFLFVLWWKICL 502
           +K++LEQ  Y I++FV  WK CL
Sbjct: 287 IKENLEQSRYFIYMFVSVWK-CL 308


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 LKKSLEQYFYCIFLFVLWWKICL 502
           +K++LEQ  Y I++FV  WK CL
Sbjct: 287 IKENLEQSRYFIYMFVSVWK-CL 308


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 234 PFPVHRTTLAIPLTRQAAH 178
           P P H T+  +PLT   AH
Sbjct: 326 PVPGHSTSPNLPLTHNIAH 344


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 68  IYFKKYSRNCHTRPKQHNR 124
           ++FK     C  + KQHN+
Sbjct: 115 VWFKNRRAKCRQQQKQHNQ 133


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 105 DLNNTTAISTVLS*TRTFPQTWVMRVLLV 191
           D NNT+  +     T  F   WV+ V++V
Sbjct: 11  DSNNTSLDAFYFFETEQFTLLWVLFVIIV 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,241
Number of Sequences: 336
Number of extensions: 3557
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)