Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20080
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          30   1.6  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   4.9  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     28   6.5  

>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -1

Query: 190 TSSTRITHVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKCHSHLTVTLRS 11
           +S TR+     NV   +  + I   +FR   ++  +F   ++ T+V+    S + VT+ S
Sbjct: 50  SSLTRLVTYSSNVTRDVTVISIVTSIFRISSSVISVFTLSFSVTLVVTVISSVIVVTISS 109

Query: 10  A 8
           +
Sbjct: 110 S 110


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 294 CCSYVIHWECLSCQYYCTS 350
           CCS  +H +C SC+  C+S
Sbjct: 262 CCSCRVHMKCSSCRVVCSS 280


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 92  NCHTRPKQHNRYIYCIKLNKNISTDMGN 175
           NCH   KQHNR++  ++ N+ +     N
Sbjct: 456 NCHLMDKQHNRHLMNMQQNRQLMDKQTN 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,632,768
Number of Sequences: 59808
Number of extensions: 382260
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)