Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20080
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    29   2.5  

>AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical
           protein K06A5.8d protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 101 TRPKQHNRYIYCIKLNKN 154
           TRPKQH   +YC+  N N
Sbjct: 408 TRPKQHRGSVYCLSFNPN 425


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 101 TRPKQHNRYIYCIKLNKN 154
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 101 TRPKQHNRYIYCIKLNKN 154
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 585 RTIRLFVQLYILSLAINTVALKKKIYCINHLLL 683
           +TIR+    Y +SL +N   + KK  C+ HL L
Sbjct: 272 QTIRVLRVFYFVSLDLNLQKILKKCVCLRHLTL 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,500
Number of Sequences: 27780
Number of extensions: 299918
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)