Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20079
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 64 1e-10
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 61 1e-09
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 54 1e-07
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 43 2e-04
07_01_1071 - 9525734-9525875,9526044-9526117 30 2.0
10_08_0077 + 14690894-14691030,14691258-14691936 29 4.7
04_04_1325 + 32666302-32667633 29 4.7
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 4.7
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 798 GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL E+ KI++ KKEF C
Sbjct: 770 SLTTVQGLKKEFSYNKILKDLKKEFCC 796
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 140 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRR 256
+ IQ FDPFA+A + + G VHVRIQQRNGR+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRK 769
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 60.9 bits (141), Expect = 1e-09
Identities = 23/43 (53%), Positives = 35/43 (81%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 63 GTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY KI++ KKEF C
Sbjct: 35 SLTTVQGLKKEYSYNKILKDLKKEFCC 61
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 167 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRR 256
DPFA+A + + G VHVRIQQRNGR+
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRK 34
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
G VVE E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 538 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
TLTTVQG+ EY+ K++R K+E C
Sbjct: 510 TLTTVQGIGGEYNYAKVLRDLKRELCC 536
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 437
GTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 73 GTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY KI++ KKEF C
Sbjct: 45 SLTTVQGLKKEYSYNKILKDLKKEFCC 71
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 140 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRR 256
+ +Q + FDPFA+A + + V G VHVRIQQRNGR+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRK 44
>07_01_1071 - 9525734-9525875,9526044-9526117
Length = 71
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 355 CSTTVPCTRTPSCM-PARSSSGHIPRKGLAP*SASTPVSLLDTD 227
CS +R PSC+ ARSS +I R+ P +A+TP L D
Sbjct: 3 CSELHGPSRRPSCLLSARSSRRNIDRQRRHPAAAATPTESLTAD 46
>10_08_0077 + 14690894-14691030,14691258-14691936
Length = 271
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 379 CSTSP-YSGCSTTVPCTRTPSCMPARSSSGHIPRKGLAP*SASTPVSLLDTDVD 221
CS+ P S TT TR+PS + S+ +PR+G A T VS+ +D++
Sbjct: 46 CSSKPRISRSPTTSGTTRSPSGVTWSLSARSVPRRGRLTHLAETFVSVPPSDMN 99
>04_04_1325 + 32666302-32667633
Length = 443
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 508 MLSVDMLCFSRAA*KPCTLSCSGFTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPCTR 329
+L V RA KPCT + + +P++++ W++ + P C++ P
Sbjct: 80 LLHVQEAAAKRAVIKPCTPTLTPPNEPEVINAWELMAGLE----DDPPTPPCASHEPPAV 135
Query: 328 TPSCMPA 308
TP M A
Sbjct: 136 TPQWMQA 142
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 91 VVSQRFVETKRPYVQSYVHPESQHI 165
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,406,454
Number of Sequences: 37544
Number of extensions: 371802
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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