Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20079
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 60 2e-09
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 60 2e-09
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 60 2e-09
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 56 2e-08
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 56 2e-08
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.97
At4g11175.1 68417.m01810 translation initiation factor IF-1, chl... 28 5.2
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 28 5.2
At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo... 27 9.0
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 27 9.0
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 27 9.0
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 27 9.0
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 27 9.0
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 27 9.0
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 27 9.0
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 27 9.0
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY KI++ KKEF C
Sbjct: 43 SLTTVQGLKKEYSYTKILKDLKKEFCC 69
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 164 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRR 256
FDPFADA VH+R+QQRNGR+
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRK 42
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY KI++ KKEF C
Sbjct: 43 SLTTVQGLKKEYSYTKILKDLKKEFCC 69
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 164 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRR 256
FDPFADA VH+R+QQRNGR+
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRK 42
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 140 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRR 256
+ +Q FDPFADA VH+R+QQRNGR+
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRK 42
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY KI++ KKEF C
Sbjct: 43 SLTTVQGLKKEYSYSKILKDLKKEFCC 69
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
G VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 70 GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 140 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRR 256
+ IQ + +DPFA+A S ++ +H+RIQQRNG++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKK 41
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY ++I++ KK+F C
Sbjct: 42 SLTTVQGLKKEYSYERILKDLKKDFCC 68
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +3
Query: 339 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 467
G VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 70 GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 140 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRR 256
+ IQ + +DPFA+A S ++ +H+RIQQRNG++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKK 41
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 256 TLTTVQGLSSEYDLKKIVRACKKEFAC 336
+LTTVQGL EY ++I++ KK+F C
Sbjct: 42 SLTTVQGLKKEYSYERILKDLKKDFCC 68
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 104 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNG 250
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNG 89
>At4g11175.1 68417.m01810 translation initiation factor IF-1,
chloroplast, putative similar to Swiss-Prot:P08698
translation initiation factor IF-1, chloroplast
[Spinacia oleracea]; contains Pfam profile PF00575: S1
RNA binding domain
Length = 141
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 160 HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*TLTTVQGLSSE 288
+IRP+ RC + GGR S P K T ++GL +E
Sbjct: 39 NIRPMIRCQRASGGRGGANRSKPAKPQVKEGSNKTVIEGLVTE 81
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 416 PLA-NILSLVALKLQHLAVLRVLHDRTL---HANSFLHARTIFFRSYSEE 279
P+A +L LV L Q ++ V HD+ L H NS++H + FR + +E
Sbjct: 383 PIAVTVLHLVKLVGQINPII-VSHDKKLKRLHKNSYIHTANLAFRQFMQE 431
>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein
contains InterPro accession IPR001757: ATPase, E1-E2
type; contains Pfam profiles PF00403:
Heavy-metal-associated domain, PF00702: haloacid
dehalogenase-like hydrolase
Length = 883
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 148 PESQHIRP----IRRCYQKLGGRRSRWFSPRPYPATKRA*TLTTVQGLSSEYDLKKI 306
P S HIRP + RC+ +L R R RP+ + ++T S+E ++ +
Sbjct: 13 PSSLHIRPSKFLVNRCFPRLRRSRIRRHCSRPFFLVSNSVEISTQSFESTESSIESV 69
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +2
Query: 44 RAHNSALSVTVILLSA*YRSVSLKQRDPTFNRMSIQN------LNTFDPFADAIKSSEDD 205
R HN + + ++ R++S+ +++R+S+Q+ LN+ +P ADA
Sbjct: 342 RTHNLIVRLRHNVIRTGLRNISI-----SYSRISLQDVAQKLRLNSANPVADAESIVAKA 396
Query: 206 VQDGLVHVRIQQRNG 250
++DG + I +NG
Sbjct: 397 IRDGAIDATIDHKNG 411
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 67 SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIRPIRRCYQKLGGRRSRWFSPRPYPATK 246
+D + VV + T RP++++ + + PI+R +KL R+ S P P+ K
Sbjct: 604 NDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVRK---LSGGPAPSFK 660
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 321 LACPHDL-LQVIFRGKALHRSQRLRPFRCWIRTWTKPS*TSSSELL 187
L+C D L V++ + LH R W+ T +P+ S S+ L
Sbjct: 798 LSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFL 843
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 321 LACPHDL-LQVIFRGKALHRSQRLRPFRCWIRTWTKPS*TSSSELL 187
L+C D L V++ + LH R W+ T +P+ S S+ L
Sbjct: 768 LSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFL 813
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 321 LACPHDL-LQVIFRGKALHRSQRLRPFRCWIRTWTKPS*TSSSELL 187
L+C D L V++ + LH R W+ T +P+ S S+ L
Sbjct: 792 LSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFL 837
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 321 LACPHDL-LQVIFRGKALHRSQRLRPFRCWIRTWTKPS*TSSSELL 187
L+C D L V++ + LH R W+ T +P+ S S+ L
Sbjct: 748 LSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFL 793
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 321 LACPHDL-LQVIFRGKALHRSQRLRPFRCWIRTWTKPS*TSSSELL 187
L+C D L V++ + LH R W+ T +P+ S S+ L
Sbjct: 768 LSCVRDQQLAVLYHNEGLHSDDRFTTVEFWVTTSIEPNSVSWSKFL 813
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,648
Number of Sequences: 28952
Number of extensions: 295473
Number of successful extensions: 832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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