Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20076
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.18 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   5.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 550 SRCQTYMNACTSQPDPNAGT 609
           S CQT +N C S P  N GT
Sbjct: 179 SYCQTEINECDSAPCQNGGT 198



 Score = 25.4 bits (53), Expect = 0.42
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 553 RCQTYMNACTSQPDPNAGT 609
           RC+  +N C S P  NAGT
Sbjct: 294 RCEGDINECLSNPCSNAGT 312



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -2

Query: 542 LTASLCTD-ITSYRCTCSP 489
           +    C D I SY CTC P
Sbjct: 33  MNGGTCIDGINSYICTCKP 51



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 550 SRCQTYMNACTSQPDPNAGT 609
           S CQ  +N C S P  N  T
Sbjct: 56  SNCQNRINLCDSSPCLNGAT 75



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 556 CQTYMNACTSQPDPNAGTTRTL 621
           C++ +N C + P  N G   T+
Sbjct: 335 CESKVNFCATSPCQNGGVCTTI 356


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 249 LDKSRCEWRGSEKTQSGLKKKR 314
           +DK  C+W+G       L+K R
Sbjct: 75  IDKQTCDWKGKVNNCDKLEKPR 96


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 449 RTDRDHQQEEALYQVNMY 502
           RTDR H Q+      NMY
Sbjct: 295 RTDRKHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 449 RTDRDHQQEEALYQVNMY 502
           RTDR H Q+      NMY
Sbjct: 243 RTDRKHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 449 RTDRDHQQEEALYQVNMY 502
           RTDR H Q+      NMY
Sbjct: 426 RTDRKHTQQHYQMNQNMY 443


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 249 LDKSRCEWRGSEKTQSGLKKKR 314
           +DK  C+W+ S K      K+R
Sbjct: 83  IDKQTCDWKDSVKNCKLKNKER 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,145
Number of Sequences: 336
Number of extensions: 3530
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)