Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20076
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 69 4e-12
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 69 4e-12
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 69 4e-12
U41540-8|AAW30667.1| 571|Caenorhabditis elegans Hypothetical pr... 30 1.3
U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical pr... 30 1.3
U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 29 2.9
Z81556-9|CAB04522.1| 87|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr... 29 3.9
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 29 3.9
AF047655-8|AAC04397.1| 227|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 29 3.9
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68161-6|CAA92295.2| 782|Caenorhabditis elegans Hypothetical pr... 28 5.1
U80027-18|AAC48115.1| 198|Caenorhabditis elegans Hypothetical p... 28 5.1
AF149286-1|AAF99085.1| 782|Caenorhabditis elegans KRP95 protein. 28 5.1
AB017106-1|BAA88837.1| 607|Caenorhabditis elegans Kinesin like ... 28 5.1
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 6.8
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 6.8
AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +2
Query: 257 VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTV 436
+E++VE+LRK +E EK+ +L +L I + + ECD+++I DR+ R TV
Sbjct: 237 IELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDRLTKRTKTV 296
Query: 437 EVTVRTDRDHQQEEALYQVNMYID 508
+V V T R+ +Q++AL + ID
Sbjct: 297 QVVVETPRNEEQKKALEDATLMID 320
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +2
Query: 257 VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTV 436
+E++VE+LRK +E EK+ +L +L I + + ECD+++I DR+ R TV
Sbjct: 295 IELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDRLTKRTKTV 354
Query: 437 EVTVRTDRDHQQEEALYQVNMYID 508
+V V T R+ +Q++AL + ID
Sbjct: 355 QVVVETPRNEEQKKALEDATLMID 378
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +2
Query: 257 VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTV 436
+E++VE+LRK +E EK+ +L +L I + + ECD+++I DR+ R TV
Sbjct: 296 IELQVEQLRKKAAELEMEKEQILRSLGEISVHNCMFKLEECDREEIEAITDRLTKRTKTV 355
Query: 437 EVTVRTDRDHQQEEALYQVNMYID 508
+V V T R+ +Q++AL + ID
Sbjct: 356 QVVVETPRNEEQKKALEDATLMID 379
>U41540-8|AAW30667.1| 571|Caenorhabditis elegans Hypothetical
protein F35H12.2c protein.
Length = 571
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 227 ERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIK-HSELLLDISECDKDDITRY 403
ER+ + +E + R + +T+R+E E D L L + K LD++E +
Sbjct: 325 ERENEDPVLRMEKEIGRHQANTLRLERENDDLAHELVTSKIELRRKLDVAEDQIETSANA 384
Query: 404 ADRILSRAMTV-EVTVRTDRDHQQEEALYQ 490
+R+ + M + E R+++Q + +Y+
Sbjct: 385 IERLTRQNMDILEENKNLMREYEQIKEMYR 414
>U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical
protein F35H12.2a protein.
Length = 930
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 227 ERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIK-HSELLLDISECDKDDITRY 403
ER+ + +E + R + +T+R+E E D L L + K LD++E +
Sbjct: 684 ERENEDPVLRMEKEIGRHQANTLRLERENDDLAHELVTSKIELRRKLDVAEDQIETSANA 743
Query: 404 ADRILSRAMTV-EVTVRTDRDHQQEEALYQ 490
+R+ + M + E R+++Q + +Y+
Sbjct: 744 IERLTRQNMDILEENKNLMREYEQIKEMYR 773
>U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical
protein F35H12.2b protein.
Length = 934
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 227 ERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIK-HSELLLDISECDKDDITRY 403
ER+ + +E + R + +T+R+E E D L L + K LD++E +
Sbjct: 688 ERENEDPVLRMEKEIGRHQANTLRLERENDDLAHELVTSKIELRRKLDVAEDQIETSANA 747
Query: 404 ADRILSRAMTV-EVTVRTDRDHQQEEALYQ 490
+R+ + M + E R+++Q + +Y+
Sbjct: 748 IERLTRQNMDILEENKNLMREYEQIKEMYR 777
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +2
Query: 218 AGAERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIKH--SELLLDISECDKDD 391
A ER+ + + V+ + L+ +E EK+ LS + +K + D+ +C KD+
Sbjct: 118 ATLEREKERDRKEVDSQFTILKNRINHLENEKEQCLSEVQELKRLLEDSEQDLKDC-KDE 176
Query: 392 ITRYADRILSRAMTVE-VTVRTDRDHQQ 472
+ R + + A ++ +T++ R Q+
Sbjct: 177 MNRLMEERVETADALDKLTIQNYRQQQE 204
>Z81556-9|CAB04522.1| 87|Caenorhabditis elegans Hypothetical
protein F58G1.9 protein.
Length = 87
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 317 SLLSTLDSIKHSELLLDISEC 379
++LSTLDS+ HSE L + +C
Sbjct: 16 AILSTLDSLLHSETALSVFDC 36
>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
protein C05D12.3c protein.
Length = 1001
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 463 PSAGGSSVSGEHVHR*LVMSVHNDAVSAHS 552
PS SSV G V+R L MS H D ++A++
Sbjct: 246 PSGTDSSVDGVDVYRRLSMSTHGDYLNANN 275
>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
protein C05D12.3a protein.
Length = 1039
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 463 PSAGGSSVSGEHVHR*LVMSVHNDAVSAHS 552
PS SSV G V+R L MS H D ++A++
Sbjct: 246 PSGTDSSVDGVDVYRRLSMSTHGDYLNANN 275
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 278 LRKDTVR-IEEEKDSLLSTLDSIKHSEL 358
LRK T+R +E +DSL TLD+ K E+
Sbjct: 1583 LRKGTIRALEHRRDSLFGTLDNRKDDEV 1610
>AF047655-8|AAC04397.1| 227|Caenorhabditis elegans Hypothetical
protein C17B7.3 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 284 KDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILS-RAMTVEVTVRTDR 460
KDT E D++L L+ K +E ++ DKD++ + D S R+ +
Sbjct: 55 KDTNCTEGSLDAILCLLNLQKFAERSHELDMNDKDELKGFKDTCDSLRSCLANLKCSPVP 114
Query: 461 DHQQEEALYQVNMYIDS 511
Q+E AL + Y D+
Sbjct: 115 KDQKEAALRSIEKYCDA 131
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 278 LRKDTVR-IEEEKDSLLSTLDSIKHSEL 358
LRK T+R +E +DSL TLD+ K E+
Sbjct: 1583 LRKGTIRALEHRRDSLFGTLDNRKDDEV 1610
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
protein F20C5.2b protein.
Length = 1130
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 209 SRNAGAERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 388
SR+ + D+ +E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 365 SRDGATQSFYDAERAKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 418
Query: 389 DITRYADRI 415
+ R A+RI
Sbjct: 419 EQARVAERI 427
>Z68161-6|CAA92295.2| 782|Caenorhabditis elegans Hypothetical
protein F20C5.2a protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 209 SRNAGAERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 388
SR+ + D+ +E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 379 SRDGATQSFYDAERAKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 432
Query: 389 DITRYADRI 415
+ R A+RI
Sbjct: 433 EQARVAERI 441
>U80027-18|AAC48115.1| 198|Caenorhabditis elegans Hypothetical
protein T28A11.3 protein.
Length = 198
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 284 KDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILS-RAMTVEVTVRTDR 460
KDT E D++L L+ K +E ++ DKD++ + D S R+ +
Sbjct: 26 KDTNCTEGSLDAILCLLNLQKFAEKSDELDMNDKDELKGFKDTCDSLRSCLANLKCSPVP 85
Query: 461 DHQQEEALYQVNMYIDS 511
Q+E AL + Y D+
Sbjct: 86 KDQKEAALRSIEKYCDA 102
>AF149286-1|AAF99085.1| 782|Caenorhabditis elegans KRP95 protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 209 SRNAGAERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 388
SR+ + D+ +E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 379 SRDGATQSFYDAERTKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 432
Query: 389 DITRYADRI 415
+ R A+RI
Sbjct: 433 EQARVAERI 441
>AB017106-1|BAA88837.1| 607|Caenorhabditis elegans Kinesin like
protein (klp-11) protein.
Length = 607
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 209 SRNAGAERQTDSSTR*VEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKD 388
SR+ + D+ +E +E ++KD I+ EKD L+ + KH D+ E ++
Sbjct: 328 SRDGATQSFYDAERAKLEDDIEAIQKDDSLIKHEKDRLIREIQE-KH-----DLLEKERI 381
Query: 389 DITRYADRI 415
+ R A+RI
Sbjct: 382 EQARVAERI 390
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 260 EMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVE 439
+ R+E R+ +RIE+ + L S K E LD K+ + R+ +M E
Sbjct: 13 QRRIEYTRQKVMRIEQMNEQLRKLSKSNKGREEKLDRLLKRKESLELDVARLTDASMRAE 72
Query: 440 VTVRTDRDHQQEEALYQVNM 499
V + H EE + +V+M
Sbjct: 73 PEVGAELLHSIEEPM-EVDM 91
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 260 EMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVE 439
+ R+E R+ +RIE+ + L S K E LD K+ + R+ +M E
Sbjct: 13 QRRIEYTRQKVMRIEQMNEQLRKLSKSNKGREEKLDRLLKRKESLELDVARLTDASMRAE 72
Query: 440 VTVRTDRDHQQEEALYQVNM 499
V + H EE + +V+M
Sbjct: 73 PEVGAELLHSIEEPM-EVDM 91
>AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical
protein D2063.4 protein.
Length = 244
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 498 CTSIAGDVRAQRRSECAFPLPDLYERV-HVSAGPQRGHDKNFETAI 632
CT +AGDV + ++ A P+ ++Y+RV HV ++ N + I
Sbjct: 85 CTHVAGDVVIENLTDIAIPI-EVYKRVRHVHGSIIIANNTNISSPI 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,266,838
Number of Sequences: 27780
Number of extensions: 332738
Number of successful extensions: 1045
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -