Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20072
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 29 2.4
U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf (tbp-associ... 29 3.1
U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine rece... 29 4.1
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 29 4.1
U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defecti... 28 7.2
U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defecti... 28 7.2
U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defecti... 28 7.2
U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defecti... 28 7.2
AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome at... 28 7.2
Z83238-5|CAB05796.1| 304|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 460 NTVSWALRLCLTTNSKLDENCIGNGIELRHREDL 561
NTV W TT++ ++ + +GN +L HRED+
Sbjct: 379 NTVHWVKMSIETTSNSVECDSVGNLDKLGHREDV 412
>U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 11.1
protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 330 KENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYS 467
+ENE ++T + LS + E + Y FQ T+RR+ +Y+
Sbjct: 227 EENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYT 272
>U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 5 protein.
Length = 345
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 541 IRFHSRYSSHQAWNLSSGRAATPS*LYFL 455
I +H Y Q W LS A PS LYFL
Sbjct: 15 ISYHPIYRLAQFWTLSVSLLAVPSLLYFL 43
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 554 KICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAG 685
K Y NES ++ + QD E+++H W ++H G
Sbjct: 236 KFMKYCNESLLEIIGRDNFATLEEMVQDSEQVEHIWNKYHQIIG 279
>U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform d protein.
Length = 733
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 267 ATGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEK 386
AT L+K +A + E EY S E+ S+Q E+ + +
Sbjct: 621 ATALQKAKAVIDELEYNSRPVSEDSMTSVQAFKEMKEENE 660
>U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform a protein.
Length = 736
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 267 ATGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEK 386
AT L+K +A + E EY S E+ S+Q E+ + +
Sbjct: 624 ATALQKAKAVIDELEYNSRPVSEDSMTSVQAFKEMKEENE 663
>U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform c protein.
Length = 761
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 267 ATGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEK 386
AT L+K +A + E EY S E+ S+Q E+ + +
Sbjct: 624 ATALQKAKAVIDELEYNSRPVSEDSMTSVQAFKEMKEENE 663
>U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform b protein.
Length = 777
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 267 ATGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEK 386
AT L+K +A + E EY S E+ S+Q E+ + +
Sbjct: 624 ATALQKAKAVIDELEYNSRPVSEDSMTSVQAFKEMKEENE 663
>AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome
attachment protein A protein.
Length = 733
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 267 ATGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEK 386
AT L+K +A + E EY S E+ S+Q E+ + +
Sbjct: 621 ATALQKAKAVIDELEYNSRPVSEDSMTSVQAFKEMKEENE 660
>Z83238-5|CAB05796.1| 304|Caenorhabditis elegans Hypothetical
protein T08G3.6 protein.
Length = 304
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +2
Query: 416 VAGLPGFHVA*NVQEIQSAGRCGSA*RQIPSLMRTVSGMESNY--ATAKICSYKNESKCD 589
V+G P + N Q GSA RQI ++R G Y +K C Y + C
Sbjct: 50 VSGAPRRNALQNAGPAQKICTPGSACRQISLIVRVCKGDTYRYILCNSKTCVYPAQRTCC 109
Query: 590 LSLEPEI 610
+ P I
Sbjct: 110 IPYVPMI 116
>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein
C09G1.2 protein.
Length = 1115
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 267 ATGLRKNRASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLR 446
AT + +S +E + T+ + K+ EE + + L L + E+A+ E+T + +DF FT++
Sbjct: 867 ATDTDQRSSSCSELKGTT-MNKKQEENT-RKRLSL-KNEEASPEKTLVRAEKDFNHFTVK 923
Query: 447 RMFKKYS-QLGVAALPDDK 500
+ + S G ALP K
Sbjct: 924 KKEECLSLSFGFIALPIKK 942
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,293,230
Number of Sequences: 27780
Number of extensions: 303255
Number of successful extensions: 1014
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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