Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20071
         (462 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DX04 Cluster: Chromosome undetermined scaffold_68, wh...    32   7.0  

>UniRef50_A0DX04 Cluster: Chromosome undetermined scaffold_68, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_68,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 334

 Score = 31.9 bits (69), Expect = 7.0
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 104 YFVN*GAYAHLAGACLASNFLYFVLILNVQ--YVHPLLVFRHLNKMFLLLEIHLLSGQKI 277
           YFV     A +    + S   YF++ +N+   YV+  L+F   +++ L ++ H L  QK+
Sbjct: 272 YFVQNNNNATIQLKFVRSKNQYFIMNVNLMLHYVNTFLIFSQSSQVVLFIQYHFLQYQKL 331

Query: 278 SL 283
            L
Sbjct: 332 DL 333


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,781,501
Number of Sequences: 1657284
Number of extensions: 6723388
Number of successful extensions: 12990
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12986
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)