Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20071
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   6.5  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   6.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 215 RLTGDGRIVHLVLEQNTENCLLDRH 141
           RL+GDG + + +    T  C++D H
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLH 166


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 212 LTGDGRIVHLVLEQNTENC 156
           L GDGR + ++  +N +NC
Sbjct: 204 LKGDGRHMEVIKIKNFDNC 222


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 SPVSL*ALK*NVSIAGNTLIKWTENK 279
           SP+S    +  +SI+G  L  WT+ +
Sbjct: 221 SPLSAGLFQGGISISGTALNCWTQTE 246


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 SPVSL*ALK*NVSIAGNTLIKWTENK 279
           SP+S    +  +SI+G  L  WT+ +
Sbjct: 92  SPLSAGLFQGGISISGTALNCWTQTE 117


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 SPVSL*ALK*NVSIAGNTLIKWTENK 279
           SP+S    +  +SI+G  L  WT+ +
Sbjct: 221 SPLSAGLFQGGISISGTALNCWTQTE 246


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -1

Query: 270 CPLNKCISSNRNILFKCLKTNRGWTY 193
           CP  +CI   R+I  + L+  +   +
Sbjct: 4   CPYARCIQERRHIRRELLRWTKNMVF 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,868
Number of Sequences: 438
Number of extensions: 2326
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)