Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20070
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 91 7e-19
01_01_0780 - 6036454-6037992 29 3.1
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 29 4.1
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 29 4.1
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 5.4
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 27 9.5
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246... 27 9.5
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 27 9.5
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 91.1 bits (216), Expect = 7e-19
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = +2
Query: 269 MTSSMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS 448
+++S + +L Q EAA +D+ L FSVDQLMELAGLSVA+A+A+V+ H+
Sbjct: 6 VSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHT 65
Query: 449 SALIVCGPGNNGGDGLVAAR 508
L++CGPGNNGGDGLVAAR
Sbjct: 66 RVLVICGPGNNGGDGLVAAR 85
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +1
Query: 520 FGYNVSVHYPKRTPKPLYENLLEQ 591
FGY SV YPKRTPKPLY L Q
Sbjct: 90 FGYKPSVCYPKRTPKPLYSGLCTQ 113
>01_01_0780 - 6036454-6037992
Length = 512
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 371 VDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGNNGGDGLVAARICSCSDTMYRYIIL 550
VD LM+ + A A PP H+S + GN D L AA+ S S + L
Sbjct: 272 VDYLMQETVREIDEAAAAGLPPPPHTSDM---ETGNLLFDFLFAAQDASTSSLCWAVSAL 328
Query: 551 NAHPNL 568
++HP++
Sbjct: 329 DSHPDV 334
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 311 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPS-THSSALIVCGPGNNGG 487
L +E D + + ++++ Q + A+A+A FP S T + L +C P ++GG
Sbjct: 322 LRDAERIVYDDNGCSYKQYTISQYFTTSA-GEAAAMATAFPYSFTRTKHLTLCPPSSHGG 380
Query: 488 D 490
D
Sbjct: 381 D 381
>07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 588 FQKVFIQRFGCAFRIMYRYIVSEQLHILAATKPSPPLFPGP 466
F K+F + G + +V +++LA + P+ PL P P
Sbjct: 1061 FPKIFSRHMGHVLYAAFSVLVIYSIYLLALSTPTSPLAPPP 1101
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 362 KFSVDQLMELAGLSVA---SAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 502
K +D++ LAG + S+I+ PPS + + + G G+NGG GL A
Sbjct: 239 KDELDRVCALAGKFLGRPISSISSPGPPSLQACSGLELGVGSNGGFGLGA 288
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 436 GWE-DLGNGTSNTQASKFHKLIDTKLVFSE 350
GWE D G+ NT AS+F + ID FSE
Sbjct: 344 GWEVDQGSYFPNTFASRFDEGIDASFDFSE 373
>05_01_0315 -
2468267-2468293,2469021-2469070,2469159-2469234,
2469498-2469575,2469967-2470048,2470146-2470238,
2470564-2470673,2470831-2470893,2471293-2471344,
2471421-2471545,2472681-2472794,2472917-2472961,
2473278-2473337,2474725-2474778,2474944-2474992,
2475071-2475252,2475349-2475404,2475491-2475584
Length = 469
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -2
Query: 185 YCFSFTNN-RYVVWFQMSVKIIFYLNPMCM-LPI*VGIIDYTLNGMICIIMYYSLIYIFT 12
YC+S +VW +SV + YL+ C+ + + +I+Y++ + + Y S+ ++F
Sbjct: 83 YCYSLKGRGASLVWLLLSVTYLCYLHGACVSFILLIALINYSI-VKVLEVAYLSIEHMFV 141
Query: 11 N 9
+
Sbjct: 142 D 142
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 525 SEQLHILAATKPSPPLFPGPHTIRADE*VEGGKTLA 418
S L + AT P+P FP P T R GG ++A
Sbjct: 303 SSVLKEVKATPPTPQRFPSPSTNRVKNVKAGGMSMA 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,666
Number of Sequences: 37544
Number of extensions: 331997
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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