Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20067
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.2  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   4.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 93   TTWGQGPGSYYCSWQHARWY 152
            T+W  G  + Y  WQ   W+
Sbjct: 1356 TSWNPGSTTNYPEWQPTEWH 1375


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 253 VNEDRPCPRDCI 288
           +NED PC R C+
Sbjct: 38  LNEDNPCARKCV 49


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
          (isoform B) protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 54 VTLDFWNLALRSSDVPR 4
          V L+FW+L L + + PR
Sbjct: 40 VDLEFWDLDLNAQNHPR 56


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  HRYYAVQDSKNQV*P 56
           H++Y+ + S+NQV P
Sbjct: 481 HQFYSSESSQNQVAP 495


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  HRYYAVQDSKNQV*P 56
           H++Y+ + S+NQV P
Sbjct: 429 HQFYSSESSQNQVAP 443


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 189 KTPTTYWINMRITNPRNTKRFCQRG 263
           +TP  YWI +R       +R  Q G
Sbjct: 401 QTPGAYWIQLRGLGECGIRRVQQLG 425


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 189 KTPTTYWINMRITNPRNTKRFCQRG 263
           +TP  YWI +R       +R  Q G
Sbjct: 401 QTPGAYWIQLRGLGECGIRRVQQLG 425


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,900
Number of Sequences: 336
Number of extensions: 2802
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)