Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20067
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 SINKTVKKDKDADNLLDQYEDYEPAEYQE 247
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 SINKTVKKDKDADNLLDQYEDYEPAEYQE 247
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 SINKTVKKDKDADNLLDQYEDYEPAEYQE 247
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 507 GKHWGDITNRAVHDFYSSNLVKS 439
           G  W D    A+ DF+ S  ++S
Sbjct: 772 GSLWADAVTLAILDFHESGFMES 794


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 129 SWQHARWYSANLSIKPS 179
           SW    W  ++LS KPS
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 SINKTVKKDKDADNLLDQYEDYEPAEYQE 247
           S+N    K  +   LL  Y D+  A+Y++
Sbjct: 94  SLNVVSDKTGNGGRLLQPYPDWSFAKYED 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,831
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)