Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20064
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 31 0.69
11_06_0764 + 27108979-27110018,27110176-27112270 29 2.8
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 29 2.8
07_03_0630 - 20097672-20097772,20097983-20102012 29 4.8
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 29 4.8
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 29 4.8
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 28 6.4
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 28 6.4
02_03_0292 - 17358129-17358213,17358462-17358541,17358627-173587... 28 6.4
>01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 31.5 bits (68), Expect = 0.69
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G + ST+ +V +VK L+G + + L+ NN ILV A QLC
Sbjct: 868 DNNIIAIGMEDSTIHIYNVRVDEVKTRLKGHQRRITGLAF---SNNLQILVSSGADAQLC 924
Query: 322 IFS 330
+++
Sbjct: 925 VWA 927
>11_06_0764 + 27108979-27110018,27110176-27112270
Length = 1044
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 339 LDLNTLASIAIVGLI--LNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRSIVISYNNW 512
L+L + S+ + G + + F F +I Q+ W G E+ EIC+ +V+ Y +
Sbjct: 633 LNLAQVRSLTVFGNLNHVPFHSFNYGII--QVLDLEGWKGLKERHVTEICQMLVLKYLSI 690
Query: 513 *FTSIHSIPYEI 548
T I IP +I
Sbjct: 691 RRTEIAKIPSKI 702
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 VILWEQQWHPCAIVGSMTIMYLLIWLLDLN--TLASIAIVGLI 383
V+LW+ + A++G T++++L ++D + TL S ++G++
Sbjct: 47 VLLWKDKKISAAVIGGATVLWVLFEVVDYHFLTLISHVLIGVL 89
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 381 ILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRSI 491
+ NFV PVI + L SW F E CRS+
Sbjct: 383 VANFVGTAGPVILDPLQSDDSWALLRRYAFVEPCRSL 419
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 VILWEQQWHPCAIVGSMTIMYLLIWLLD--LNTLASIAIVGLI 383
V+LW+ + ++G T++++L +LD L TL S ++G +
Sbjct: 83 VLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMIGAL 125
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G ST+Q ++ +VK L G + L+ N +LV A Q+C
Sbjct: 876 DNNIIAIGMDDSTIQIYNVRIDEVKSKLRGHSKKITGLAF---SNVLNVLVSSGADAQIC 932
Query: 322 IFS 330
++S
Sbjct: 933 VWS 935
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 530 MNGCKSPIIVAYYNASTNFFKCLLVLSC-PRTRSI--KLVAYNW 408
+N + + V+YYN + CLL LSC P +I K V + W
Sbjct: 329 VNNMRKILSVSYYNLPPHLRACLLYLSCYPEDTNIGNKDVIWKW 372
>08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G + ST+Q +V +VK L+G + L+ + +LV A QLC
Sbjct: 910 DNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAF---SQSMNMLVSSGADAQLC 966
Query: 322 IFS 330
+S
Sbjct: 967 AWS 969
>02_03_0292 -
17358129-17358213,17358462-17358541,17358627-17358797,
17359440-17359541,17360216-17360365,17360549-17360671,
17360781-17360867,17361209-17361289,17362071-17362210,
17363490-17363534,17365315-17365485,17365784-17365805
Length = 418
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 524 GCKSPIIVAYYNASTNFFKCLL 459
G +P+I A N T+F+KCLL
Sbjct: 191 GTVTPLITAANNGQTDFYKCLL 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,934,194
Number of Sequences: 37544
Number of extensions: 342360
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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