Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20063
(681 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 158 1e-37
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 154 2e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 138 1e-31
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 133 2e-31
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 122 8e-27
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 118 1e-25
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 116 4e-25
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 114 2e-24
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 113 3e-24
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 111 2e-23
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 100 7e-20
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 83 5e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 67 4e-10
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 66 6e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 61 3e-08
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 60 4e-08
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 58 3e-07
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 56 8e-07
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 55 1e-06
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 55 2e-06
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 55 2e-06
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 54 2e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 51 2e-05
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 50 4e-05
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 48 2e-04
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 48 3e-04
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 48 3e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 46 6e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 46 9e-04
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 46 0.001
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 39 0.098
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 38 0.17
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 1.6
UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; L... 35 2.1
UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila pseudoobscu... 34 2.8
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 34 3.7
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.9
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 33 4.9
UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6; ... 33 4.9
UniRef50_A0HHE0 Cluster: Putative uncharacterized protein precur... 33 8.5
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 158 bits (383), Expect = 1e-37
Identities = 77/134 (57%), Positives = 89/134 (66%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++
Sbjct: 71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWG 608
G K +P+LVTHD RTIRYPDPLIKV L+ ++ G G
Sbjct: 131 VGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLG 190
Query: 609 VWAPSCSRERHPGS 650
+RERHPGS
Sbjct: 191 RIGVITNRERHPGS 204
Score = 135 bits (327), Expect = 8e-31
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 220 VLKIVKQRLIKVMGK 264
V KI QR IK+ GK
Sbjct: 61 VKKICMQRFIKIDGK 75
Score = 77.8 bits (183), Expect = 2e-13
Identities = 33/62 (53%), Positives = 44/62 (70%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G I FD+VH+K
Sbjct: 152 PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVK 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 154 bits (374), Expect = 2e-36
Identities = 75/134 (55%), Positives = 87/134 (64%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 71 KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWG 608
G K VP+LVTHDGRTIRYPDPLI + ++ G G
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLG 190
Query: 609 VWAPSCSRERHPGS 650
+RERHPGS
Sbjct: 191 RVGTVVNRERHPGS 204
Score = 138 bits (334), Expect = 1e-31
Identities = 65/75 (86%), Positives = 68/75 (90%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 220 VLKIVKQRLIKVMGK 264
V KIV QRL+KV GK
Sbjct: 61 VTKIVMQRLVKVDGK 75
Score = 88.6 bits (210), Expect = 1e-16
Identities = 41/62 (66%), Positives = 48/62 (77%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + DS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V FDIVHIK
Sbjct: 152 PLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIK 211
Query: 671 DS 676
DS
Sbjct: 212 DS 213
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 138 bits (334), Expect = 1e-31
Identities = 71/132 (53%), Positives = 83/132 (62%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 73 DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGVW 614
K +PYL T+DGRTIRYPDPLIK L+ ++ G V G
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRV 192
Query: 615 APSCSRERHPGS 650
+RE+H GS
Sbjct: 193 GVIKNREKHKGS 204
Score = 122 bits (295), Expect = 6e-27
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V+ I+ QR I+V GK
Sbjct: 61 VISILMQRHIQVDGK 75
Score = 67.3 bits (157), Expect = 3e-10
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG I + F+ +HI+
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQ 211
Query: 671 DST 679
DST
Sbjct: 212 DST 214
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 133 bits (322), Expect = 3e-30
Identities = 61/74 (82%), Positives = 66/74 (89%)
Frame = +1
Query: 43 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 222
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 223 LKIVKQRLIKVMGK 264
KI QR IK+ GK
Sbjct: 62 KKICMQRFIKIDGK 75
Score = 89.4 bits (212), Expect(2) = 2e-31
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
K DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 71 KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 75.4 bits (177), Expect = 1e-12
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D++++D+ T KI DFIKF++ N+CM+TGG NLGR+G I FD+VH+K
Sbjct: 184 PLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVK 243
Query: 671 DST 679
DST
Sbjct: 244 DST 246
Score = 69.7 bits (163), Expect(2) = 2e-31
Identities = 36/85 (42%), Positives = 44/85 (51%)
Frame = +3
Query: 396 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGT 575
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKV L ++
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 576 CV*SREAVTWGVWAPSCSRERHPGS 650
G +RERHPGS
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGS 236
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 122 bits (294), Expect = 8e-27
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 220 VLKIVKQRLIKVMGK 264
V KI Q IK+ GK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 95.5 bits (227), Expect = 1e-18
Identities = 47/101 (46%), Positives = 58/101 (57%)
Frame = +3
Query: 348 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*T 527
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 528 LQLRRLWTSSSLSPGTCV*SREAVTWGVWAPSCSRERHPGS 650
L+ ++ G G +RE HPGS
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGS 176
Score = 76.6 bits (180), Expect = 5e-13
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+IQ+D+ T KI DF KF++GNLCM+TGG NLGR+G I FD+VH+K
Sbjct: 124 PLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVK 183
Query: 671 DS 676
D+
Sbjct: 184 DA 185
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 118 bits (284), Expect = 1e-25
Identities = 60/136 (44%), Positives = 79/136 (58%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A G
Sbjct: 185 DGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIG 244
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGVW 614
P +PY+VTHD RTIR+P+P IK+ L ++ + L G ++ G
Sbjct: 245 PNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRV 304
Query: 615 APSCSRERHPGSSTLC 662
E+H GS +C
Sbjct: 305 GIIQHIEKHQGSFDIC 320
Score = 66.1 bits (154), Expect = 7e-10
Identities = 45/105 (42%), Positives = 58/105 (55%), Gaps = 31/105 (29%)
Frame = +1
Query: 43 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 144
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 145 ---HKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVMGK 264
HKLRE LPL + L+ RL YAL G +V I+ K++ + V GK
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGK 187
Score = 55.2 bits (127), Expect = 1e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+++ D+ KI +F ESGN+C I G N+GRVG I + FDI H+K
Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVK 323
Query: 671 DS 676
D+
Sbjct: 324 DA 325
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 116 bits (280), Expect = 4e-25
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V IVK R IK+ GK
Sbjct: 61 VTMIVKNRTIKIDGK 75
Score = 111 bits (267), Expect = 2e-23
Identities = 57/134 (42%), Positives = 76/134 (56%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++
Sbjct: 71 KIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRV 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWG 608
G +PY+VTHDGRTIRYP P ++ L+ ++ G G
Sbjct: 131 LGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMG 190
Query: 609 VWAPSCSRERHPGS 650
RE HPGS
Sbjct: 191 RVGVIVKREVHPGS 204
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P Q+ D+I+L++ T KI+DF+KF+ GN M+ GG +GRVG IV F+IVHIK
Sbjct: 152 PELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIK 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 114 bits (275), Expect = 2e-24
Identities = 59/134 (44%), Positives = 77/134 (57%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++
Sbjct: 81 KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIF 140
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWG 608
K +P+LV HD T+R+PD LIKV L+ ++ T+ G WG
Sbjct: 141 VRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Query: 609 VWAPSCSRERHPGS 650
+RERHP S
Sbjct: 200 RIGVITNRERHPVS 213
Score = 109 bits (262), Expect = 6e-23
Identities = 55/78 (70%), Positives = 63/78 (80%)
Frame = +1
Query: 31 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 210
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 211 GNEVLKIVKQRLIKVMGK 264
G+EV KI Q IKV GK
Sbjct: 68 GDEVKKICMQWFIKVDGK 85
Score = 57.2 bits (132), Expect = 3e-07
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +2
Query: 509 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIKDS 676
D+IQ+D+ T KI +KF++GNLC++TGG N GR+G I FD H+KD+
Sbjct: 168 DTIQIDLETGKITA-LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDA 222
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 113 bits (273), Expect = 3e-24
Identities = 50/83 (60%), Positives = 65/83 (78%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G
Sbjct: 73 DGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIK 503
K +PY+VTHDGRTIR+P+ LIK
Sbjct: 133 SKGIPYIVTHDGRTIRFPNLLIK 155
Score = 97.5 bits (232), Expect = 3e-19
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 220 VLKIVKQRLIKVMGK 264
L I+K+ I V GK
Sbjct: 61 SLNILKKNEIYVDGK 75
Score = 52.0 bits (119), Expect = 1e-05
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +2
Query: 500 QSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 625
+S DSI LD+ K++DFIKF G+LC++ G N+GR+G +
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFI 196
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 111 bits (267), Expect = 2e-23
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 85 KVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFK 144
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKV 506
G K +P++VTHDGRTI Y DP ++V
Sbjct: 145 IGAKGIPHVVTHDGRTISYVDPSVRV 170
Score = 105 bits (252), Expect = 1e-21
Identities = 53/88 (60%), Positives = 62/88 (70%)
Frame = +1
Query: 1 RHEVSFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIF 180
R + SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IF
Sbjct: 2 RRKKSFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIF 61
Query: 181 LRNRLKYALTGNEVLKIVKQRLIKVMGK 264
LR+RLKYALT E + IVK+RL+KV GK
Sbjct: 62 LRDRLKYALTAKEAVAIVKRRLVKVDGK 89
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/63 (39%), Positives = 42/63 (66%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P+ + D+++ +I T ++ IKF+ G++ M+T G N+GRVGTI + FDIVH+K
Sbjct: 166 PSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLK 225
Query: 671 DST 679
D++
Sbjct: 226 DTS 228
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 99.5 bits (237), Expect = 7e-20
Identities = 45/67 (67%), Positives = 52/67 (77%)
Frame = +1
Query: 55 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 234
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 235 KQRLIKV 255
+Q L+ V
Sbjct: 63 RQGLVHV 69
Score = 94.7 bits (225), Expect = 2e-18
Identities = 45/80 (56%), Positives = 52/80 (65%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
D R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T
Sbjct: 70 DNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTA 129
Query: 435 PKNVPYLVTHDGRTIRYPDP 494
VP VTHDG IRYPDP
Sbjct: 130 TGRVPVAVTHDGHRIRYPDP 149
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 509 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIKDST 679
D+I ++ K +D IK G ++TGG N GR+G IV F+I H+KD++
Sbjct: 155 DTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDAS 211
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 83.4 bits (197), Expect = 5e-15
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K +G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKY 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLI 500
+ +PY+V+ G +IR+ DP I
Sbjct: 131 EN-QGIPYIVSSCGLSIRFCDPAI 153
Score = 76.2 bits (179), Expect = 7e-13
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 220 VLKIVKQRLIKVMGK 264
+ I+ ++ IKV G+
Sbjct: 61 LSIILAEKNIKVNGR 75
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 66.9 bits (156), Expect = 4e-10
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +1
Query: 46 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 225
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 226 KIVKQRLIKVMG 261
KI++ I + G
Sbjct: 64 KIIQTGKILIDG 75
Score = 46.4 bits (105), Expect = 6e-04
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVA 428
DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V
Sbjct: 74 DGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVV 131
Query: 429 TGPKNVPYLVTHDGR 473
G N+ L HDGR
Sbjct: 132 KG-GNI-QLNLHDGR 144
Score = 36.3 bits (80), Expect = 0.69
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 497 YQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIKD 673
Y++ DS+ + I I + F G L ITGG+++G IV + DIV +++
Sbjct: 161 YKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLEN 219
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 66.5 bits (155), Expect = 6e-10
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 49 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 225
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 226 KIVKQRLIKVMG 261
KI+ + I V G
Sbjct: 67 KIITRGEIYVDG 78
Score = 56.4 bits (130), Expect = 6e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 77 DGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYV 136
Query: 435 PKNVPYLVTHDGRT--IRYPDP 494
+ HDG+ + DP
Sbjct: 137 RGGNLQITMHDGKNWLVEIEDP 158
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/75 (38%), Positives = 45/75 (60%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 74 DGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTI 131
Query: 435 PKNVPYLVTHDGRTI 479
+ HDG+ +
Sbjct: 132 KGGKIQVNLHDGKNV 146
Score = 49.2 bits (112), Expect = 9e-05
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +1
Query: 49 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 228
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 229 IVKQRLIKVMGK 264
I+ + V G+
Sbjct: 65 IINSGNVLVDGR 76
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 61 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 237
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 238 QRLIKVMG 261
+ +KV G
Sbjct: 63 RGYVKVDG 70
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 67 KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKT 126
Query: 429 TGPKNVPYLVTHDGRTI 479
L HDGR +
Sbjct: 127 MVKGGRIQLHFHDGRNL 143
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 57.6 bits (133), Expect = 3e-07
Identities = 33/86 (38%), Positives = 44/86 (51%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 67 KVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKV 124
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKV 506
P N L THDGRT D KV
Sbjct: 125 IAPGNRIQLGTHDGRTFITDDKSKKV 150
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 56.0 bits (129), Expect = 8e-07
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +1
Query: 31 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 210
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 211 GNEVLKIVKQRLIKVMGK 264
E +I+ R+I+V G+
Sbjct: 61 MKEARRILASRVIEVDGR 78
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 76 DGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTV 135
Query: 435 PKNVPYLVTHDGRTI 479
HDGR +
Sbjct: 136 KNGDLQFTLHDGRNV 150
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 55.2 bits (127), Expect = 1e-06
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++ T
Sbjct: 68 DGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTL 127
Query: 435 PKNVPYLVTHDGRTIRYP-DPLIKVKIPSS*TLQL 536
V L DGR I + L + +P+ TL++
Sbjct: 128 KSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKI 162
Score = 39.9 bits (89), Expect = 0.056
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 241 RLIKVMGK 264
+ V GK
Sbjct: 63 GKVLVDGK 70
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/77 (38%), Positives = 38/77 (49%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 66 KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKT 125
Query: 429 TGPKNVPYLVTHDGRTI 479
L HDGR I
Sbjct: 126 MVKAGKIQLNLHDGRNI 142
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 241 RLIKVMGK 264
+KV GK
Sbjct: 63 GYVKVDGK 70
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 54.8 bits (126), Expect = 2e-06
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVAT 431
DG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T
Sbjct: 74 DGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTT 132
Query: 432 GPKNVPYLVTHDGRTI--RYPDP 494
L HDGR I R DP
Sbjct: 133 VKGGHVQLNLHDGRNILVRVKDP 155
Score = 53.6 bits (123), Expect = 4e-06
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 40 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 216
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 217 EVLKIVKQRLIKVMG 261
E K++ + +V G
Sbjct: 61 EARKLISEGHFRVDG 75
Score = 41.9 bits (94), Expect = 0.014
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +2
Query: 470 PHHPLSRPTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 622
P +P+ Y++ D++ + + +I IKF G + +I GGRN+GRVG +
Sbjct: 155 PRNPVE-DVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 54.4 bits (125), Expect = 2e-06
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRV 425
K DG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+
Sbjct: 68 KVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKT 127
Query: 426 ATGPKNVPYLVTHDGRTI 479
G + L HDG+TI
Sbjct: 128 IIGTGKI-QLGFHDGKTI 144
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 51.2 bits (117), Expect = 2e-05
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVAT 431
DG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+
Sbjct: 74 DGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSV 133
Query: 432 GPKNVPYLVTHDGRT 476
+ Y +T DGRT
Sbjct: 134 RGGKIQYTLT-DGRT 147
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 55 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 231
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 232 VKQRLIKVMGK 264
+ + V G+
Sbjct: 66 LNNGKVLVDGR 76
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 50.4 bits (115), Expect = 4e-05
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 241 RLIKVMGK 264
+ V GK
Sbjct: 65 GKVLVDGK 72
Score = 46.8 bits (106), Expect = 5e-04
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 70 DGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTAL 127
Query: 435 PKNVPYLVTHDGRTI 479
L HDG T+
Sbjct: 128 RGGKIQLNLHDGTTM 142
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 67 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 246
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 247 IKVMG 261
+ + G
Sbjct: 64 VLLNG 68
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 431
+G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 67 NGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/79 (34%), Positives = 40/79 (50%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 70 DGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTI 127
Query: 435 PKNVPYLVTHDGRTIRYPD 491
+ HDGR I D
Sbjct: 128 TDGKTQIHLHDGRNILVSD 146
Score = 47.2 bits (107), Expect = 4e-04
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 241 RLIKVMGK 264
R + V G+
Sbjct: 65 RQVLVDGR 72
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 68 DGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTV 126
Query: 435 PKNVPYLVTHDGRTI 479
L +DG I
Sbjct: 127 KGGKIQLNLNDGTNI 141
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 241 RLIKVMG 261
+ V G
Sbjct: 63 GKVLVDG 69
Score = 41.5 bits (93), Expect = 0.018
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +2
Query: 497 YQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRE 637
Y ++DS+ L I ++ +KFE GNL M+ GG++ G G I+ RE
Sbjct: 147 YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIRE 193
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 46.4 bits (105), Expect = 6e-04
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
+GK +P MD +S N+ +R++ G+ T++ I E K+CKV ++
Sbjct: 73 NGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINA 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVK 509
++T D R ++ IKV+
Sbjct: 133 SSKNKIIITDDLRELKINYAKIKVE 157
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +2
Query: 506 QDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
+DS+ + +I+ +KFE G+LC+IT G++LG + I R+T L ++H++
Sbjct: 157 EDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLE 211
Score = 41.5 bits (93), Expect = 0.018
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 220 VLKIVKQRLIKVMGK 264
K+VK + V GK
Sbjct: 61 AQKVVKTGFLYVNGK 75
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 46.0 bits (104), Expect = 9e-04
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +1
Query: 58 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 237
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 238 QRLIKVMGK 264
QR + V G+
Sbjct: 62 QRDVLVNGR 70
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 431
+G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 68 NGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
Score = 39.1 bits (87), Expect = 0.098
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Frame = +2
Query: 482 LSRPTYQSQDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIV 625
L+ TY+++DS+ + + T +I+D + GN+ MI GG++ G+VG IV
Sbjct: 143 LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIV 195
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +2
Query: 497 YQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 622
Y ++DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 148 YNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
Score = 41.1 bits (92), Expect = 0.024
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 241 RLIKVMG 261
+ V G
Sbjct: 64 GNVLVDG 70
Score = 40.7 bits (91), Expect = 0.032
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 419
DG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 69 DGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 39.1 bits (87), Expect = 0.098
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 61 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 240
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 241 RLIKVMGK 264
+ + GK
Sbjct: 63 DNVLINGK 70
Score = 39.1 bits (87), Expect = 0.098
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
+GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 68 NGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHV 127
Query: 435 PKNVPYLVTHDGRTIRYPD 491
L HDG T+ D
Sbjct: 128 SGGDVQLGLHDGETLIVED 146
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 38.3 bits (85), Expect = 0.17
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 488 RPTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 622
R ++ DS+ + I +I+D +KF GN ITGG ++G + TI
Sbjct: 145 RKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 67 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 246
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 247 IKVMGK 264
+ V GK
Sbjct: 66 VMVDGK 71
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 172 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 26
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1;
Lactobacillus plantarum|Rep: Acetyltransferase (GNAT)
family - Lactobacillus plantarum
Length = 163
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 418 SVWRPDLRMFRTW*RMMAAPSAIQTHLSKSRFHPVRHCNYEDYG-LHQV*VRELVYDHG 591
+ WRP+ R W M+ A +A + F P RH NYE +G L+ + V + HG
Sbjct: 46 ATWRPE----RRWQNMLLAMTADGEVVGVCTFGPARHANYEGWGELYSLYVHPNYHHHG 100
>UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila
pseudoobscura|Rep: GA20855-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1177
Score = 34.3 bits (75), Expect = 2.8
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +3
Query: 75 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHKG 254
K QS+D + + T + Q + L G+ EE +V FDRK SP ET P K
Sbjct: 594 KVHQSLDESKMLALIEGATESTIVQSVQKLTAGEDSEEDDDV-FDRKDSPRFLETNPFKD 652
Query: 255 DGK 263
D +
Sbjct: 653 DAQ 655
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 33.9 bits (74), Expect = 3.7
Identities = 14/57 (24%), Positives = 34/57 (59%)
Frame = +1
Query: 94 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVMGK 264
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L ++ +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDILDR 477
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 4.9
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 227 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 57
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 56 LGPRAML 36
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 33.5 bits (73), Expect = 4.9
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = -2
Query: 500 DKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFIS 321
D + + +GAA+++ R+ L QLVL D V ES+L ++D + FI+
Sbjct: 127 DHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIA 186
Query: 320 LLN*DNI 300
L + D++
Sbjct: 187 LFDGDDV 193
>UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 1760
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 240 TPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 419
T +G+ +RTDP+Y + V+ +++ L +I++++ F+ + + K +LC
Sbjct: 1046 TRRRGECILRTDPSYHSAPSAVIKLQQLIRLEEIIFNMRNNFSNELLKLRDEKERLCGTL 1105
Query: 420 RVA 428
V+
Sbjct: 1106 NVS 1108
>UniRef50_A0HHE0 Cluster: Putative uncharacterized protein
precursor; n=1; Comamonas testosteroni KF-1|Rep:
Putative uncharacterized protein precursor - Comamonas
testosteroni KF-1
Length = 222
Score = 32.7 bits (71), Expect = 8.5
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 681 PVESLMCTMSKSRDVSRGNTMVPTRPKL 598
PVESLM T+ K+R S+ T+ T+PKL
Sbjct: 103 PVESLMSTVQKARQQSQCKTVSATKPKL 130
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,337,346
Number of Sequences: 1657284
Number of extensions: 16383468
Number of successful extensions: 45549
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 43671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45522
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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