Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20063
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 155 4e-39
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 155 7e-39
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 154 1e-38
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 28 1.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.3
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 26 5.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 155 bits (377), Expect = 4e-39
Identities = 69/86 (80%), Positives = 76/86 (88%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKV 506
G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156
Score = 123 bits (296), Expect = 3e-29
Identities = 55/75 (73%), Positives = 61/75 (81%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V I+ QRLIKV GK
Sbjct: 61 VKAILMQRLIKVDGK 75
Score = 65.3 bits (152), Expect = 8e-12
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV F+I+H+K
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVK 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 155 bits (375), Expect = 7e-39
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 73 DGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKV 506
K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 133 AKGVPFLVTHDGRTIRYPDPLIKV 156
Score = 121 bits (292), Expect = 8e-29
Identities = 54/75 (72%), Positives = 61/75 (81%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V I+ QRLI+V GK
Sbjct: 61 VKAILMQRLIQVDGK 75
Score = 65.3 bits (152), Expect = 8e-12
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV F+I+H+K
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVK 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 154 bits (374), Expect = 1e-38
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKV 506
G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156
Score = 123 bits (296), Expect = 3e-29
Identities = 55/75 (73%), Positives = 61/75 (81%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V I+ QRLIKV GK
Sbjct: 61 VKAILMQRLIKVDGK 75
Score = 65.3 bits (152), Expect = 8e-12
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P + D+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV F+I+H+K
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVK 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 72 LKRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 251
LK S+++ + + + R P V+ P P E FDR+ N +
Sbjct: 336 LKSSETLKNPRNDDLLTLQQPPRYPHSQMVMLPARSPVEVPAPTFDRRNVSRNSNNNSPE 395
Query: 252 GDGKVRTDPT 281
G RT+PT
Sbjct: 396 GYDNNRTNPT 405
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 300 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 476
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 477 IR 482
++
Sbjct: 1778 LK 1779
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = +3
Query: 174 DFPEESSEVCFDRKRSPENCETTPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 353
DFP E + + + + + T H G+ DP+Y +D +S+++ + RL+ D
Sbjct: 186 DFPPELFQEVY-KLAAEKGIRRTGHAGE---EGDPSYIRSGLDNLSLQRIDHGIRLVED- 240
Query: 354 KGRFTIHRITPEEAKYKLCKVKRV 425
+ + R+ E +C + +
Sbjct: 241 --KELMKRVAEENIMLTMCPLSNL 262
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 395 SLLRGDTVDCESALNIID*TKQ 330
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,913
Number of Sequences: 5004
Number of extensions: 65717
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -