Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20063
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 136 2e-32
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 132 3e-31
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 131 6e-31
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.84
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.4
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 3.4
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 4.5
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.0
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 136 bits (329), Expect = 2e-32
Identities = 70/132 (53%), Positives = 82/132 (62%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G
Sbjct: 89 DGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFG 148
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGVW 614
K +P+L T+DGRTIRYPDPLIK L+ ++ G V G
Sbjct: 149 QKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRV 208
Query: 615 APSCSRERHPGS 650
SRE+H GS
Sbjct: 209 GVIKSREKHKGS 220
Score = 118 bits (284), Expect = 4e-27
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +1
Query: 43 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 222
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 223 LKIVKQRLIKVMGK 264
+ I+ QR + V GK
Sbjct: 78 ISILMQRHVMVDGK 91
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P ++ D+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I + F+ +H++
Sbjct: 168 PLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVE 227
Query: 671 DS 676
D+
Sbjct: 228 DA 229
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 132 bits (318), Expect = 3e-31
Identities = 66/132 (50%), Positives = 81/132 (61%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 73 DGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGVW 614
K +PYL T+DGRTIRYPDPLIK L+ ++ G V G
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRV 192
Query: 615 APSCSRERHPGS 650
+RE+H GS
Sbjct: 193 GVIKNREKHKGS 204
Score = 120 bits (290), Expect = 8e-28
Identities = 54/75 (72%), Positives = 63/75 (84%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V+ I+ QR + V GK
Sbjct: 61 VISILMQRHVLVDGK 75
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P ++ D+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I + F+ +H++
Sbjct: 152 PLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVE 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 131 bits (316), Expect = 6e-31
Identities = 65/132 (49%), Positives = 81/132 (61%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 73 DGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGVW 614
K +PYL T+DGRTIRYPDP+IK L+ ++ G V G
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRV 192
Query: 615 APSCSRERHPGS 650
+RE+H GS
Sbjct: 193 GVIKNREKHKGS 204
Score = 120 bits (290), Expect = 8e-28
Identities = 54/75 (72%), Positives = 63/75 (84%)
Frame = +1
Query: 40 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 220 VLKIVKQRLIKVMGK 264
V+ I+ QR + V GK
Sbjct: 61 VISILMQRHVLVDGK 75
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +2
Query: 491 PTYQSQDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVFPRETSRLFDIVHIK 670
P ++ D+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I + F+ +H++
Sbjct: 152 PIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVE 211
Query: 671 DS 676
D+
Sbjct: 212 DA 213
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 184 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 83
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 197 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 69
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 565 VRELVYDHGRP*LGACG-HHRVPARDIPALRHCAHQ 669
V +LVYDHGR + A G RVPA A HQ
Sbjct: 95 VSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQ 130
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 156 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 43
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 81 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 245
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 333 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 437
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,143,643
Number of Sequences: 37544
Number of extensions: 475312
Number of successful extensions: 1436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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