Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20062
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 118 7e-28
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 115 7e-27
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 76 5e-15
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 28 1.3
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 2.3
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 26 4.0
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.9
SPAC4G8.15c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 6.9
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 118 bits (284), Expect = 7e-28
Identities = 54/104 (51%), Positives = 78/104 (75%)
Frame = +1
Query: 256 QQIKGMIFQFIRRESCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEG 435
+QI+ M+ ++I + + +ILAV ANTDLANSD LKLA+EVDP+GLRTIGV+TK+DLMD+G
Sbjct: 171 KQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDLMDKG 230
Query: 436 TDARDVLENKLLPLRRGYIGVVNRCRKTLTVART*PLHLRLREN 567
TD D+L +++PLR GY+ V+NR +K + ++ + L N
Sbjct: 231 TDVVDILAGRVIPLRLGYVPVINRGQKDIEGKKSIRIALEAERN 274
Score = 109 bits (261), Expect = 4e-25
Identities = 49/78 (62%), Positives = 61/78 (78%)
Frame = +2
Query: 20 NGNTEYAEFLHCKGKKFTDFNEVRGEIEAETDRVTGSNKGISPVPINLRVYSPNVLNLTL 199
N ++E+ EFLH G+KF +F ++R EI ET+ TG N GIS VPI LR+YSP+VL LTL
Sbjct: 92 NNSSEWGEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTL 151
Query: 200 IDLPGLTKVPIGDQPIDI 253
+DLPGLTKVP+GDQP DI
Sbjct: 152 VDLPGLTKVPVGDQPRDI 169
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3
Query: 510 QKDIDGRKDIAAALAAERKFFLSHPSYRHLADRLGT 617
QKDI+G+K I AL AER FF +HPSY A GT
Sbjct: 256 QKDIEGKKSIRIALEAERNFFETHPSYGSKAQYCGT 291
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 115 bits (276), Expect = 7e-27
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = +2
Query: 32 EYAEFLHCKGKKFTDFNEVRGEIEAETDRVTGSNKGISPVPINLRVYSPNVLNLTLIDLP 211
+YAEFLH KFTD N+VR EIE ET RV G+NKGI+ +PINL++YS VLNLTLIDLP
Sbjct: 113 DYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLP 172
Query: 212 GLTKVPIGDQPIDI 253
GLTK+P+GDQP DI
Sbjct: 173 GLTKIPVGDQPTDI 186
Score = 105 bits (251), Expect = 7e-24
Identities = 45/88 (51%), Positives = 67/88 (76%)
Frame = +1
Query: 259 QIKGMIFQFIRRESCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGT 438
Q + +I ++I R + +ILAV+PAN D+ NS+ LKLA+ VDP+G RTIGV+TKLDLMD+GT
Sbjct: 189 QTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSVDPKGKRTIGVLTKLDLMDQGT 248
Query: 439 DARDVLENKLLPLRRGYIGVVNRCRKTL 522
+A D+L ++ PL+ G++ VNR + +
Sbjct: 249 NAMDILSGRVYPLKLGFVATVNRSQSDI 276
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +3
Query: 510 QKDIDGRKDIAAALAAERKFFLSHPSYRHLADRLGT 617
Q DI K + AL +ER FF HP+YR + DR GT
Sbjct: 273 QSDIVSHKSMRDALQSERSFFEHHPAYRTIKDRCGT 308
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 75.8 bits (178), Expect = 5e-15
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = +1
Query: 292 RESCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLL 471
RE +ILAV A+ DLANS AL+ ++ VDP GLRTIGV+TK+DL+ + A +L N
Sbjct: 399 REPNIILAVCAADVDLANSAALRASRRVDPLGLRTIGVVTKMDLVPP-SKAISILHNNNY 457
Query: 472 PLRRGYIGVVNR 507
PL GYIGV++R
Sbjct: 458 PLHYGYIGVISR 469
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +2
Query: 35 YAEFLHCKGKKFTDFNEVRGEIEAETDRVTGSNKGISPVPINLRVYSPNVLNLTLIDLPG 214
Y EF + K TDF++++ I + + S++G+ PI L +Y+ ++ NL+LIDLPG
Sbjct: 315 YGEFSGVQLGKITDFSKIQ-HILTDLNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPG 373
Query: 215 LTKVPIGDQPIDI 253
++ DQP D+
Sbjct: 374 YIQIHSEDQPADL 386
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 101 EAETDRVTGSNKGISPVPI--NLRVYSPNVLNLTLIDLPGLTKVP 229
+AETD + S K S +P+ N+ + PN L + I+LP P
Sbjct: 1349 KAETDSLAASYKEESALPVASNVGLRQPNELRIDSINLPPAIVTP 1393
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 301 CLILAVTPANTDLANSDALKLAKE 372
CL +TP+ T + NSD+L L K+
Sbjct: 203 CLHCPLTPSTTHIVNSDSLALMKK 226
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 228 GTFVRPGK-SISVRLSTFGE*TRRLIGTGDIPLLEPVTRSVSASISPRTSLKSVNFF 61
G GK SI + FG+ ++ G +LEP+ + A I+ L +NFF
Sbjct: 59 GDVTEVGKASIETAIKKFGKLDSVILNAG---VLEPIAKIADADINEWRKLFDINFF 112
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 295 ESCLILAVTPANTDLANSDALKL 363
E C +L + +NTD+ NS +L L
Sbjct: 232 EKCTVLLLKRSNTDVDNSSSLSL 254
>SPAC4G8.15c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 46
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 247 YRLITDWHFCQTRQINQRQVEHIRGINTQVNRYRRYTLVGTSNTI 113
Y + H Q N+R++ HI + T+ +RY + ++ + NTI
Sbjct: 3 YEIFIMQHLLIKSQSNERKITHIFHMLTKFDRYSK-MILNSINTI 46
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 250 IYRLITDWHFCQTRQINQRQVEHIRGINTQVNRYRRYTLVGTSNTICL 107
++R+ H+C T+ Q + + ++ +TLVG TICL
Sbjct: 164 VHRICNLLHWCNTKTEEQTRAALQSWLPKELWFELNHTLVGFGQTICL 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,053
Number of Sequences: 5004
Number of extensions: 48982
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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