Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20062
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.81 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 22  WKYRICRILTLQGKEVH 72
           W ++ C  +++ GKEVH
Sbjct: 116 WDFQECTFISVNGKEVH 132


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 336 IRVGRSNCQDKA*FASDELEY 274
           + +G+  C D   + SDEL Y
Sbjct: 195 VDLGKGGCNDAFAYMSDELGY 215


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 NR*SAYRYRQQIKGMIFQFIRRESCL 306
           +R SAY+  Q+I+  +F F    SC+
Sbjct: 286 DRNSAYKIDQRIQKGLFLFACTNSCM 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,858
Number of Sequences: 438
Number of extensions: 3548
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)