Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20060
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 103 1e-23
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 103 2e-23
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.57
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 3.0
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 7.0
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 7.0
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 7.0
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 9.3
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.3
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 9.3
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.3
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.3
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 103 bits (248), Expect = 1e-23
Identities = 49/78 (62%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 VRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAH 439
V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH
Sbjct: 80 VGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAH 139
Query: 440 IVS-GTEKPVLLAPIPYE 490
VS +PV L P+ Y+
Sbjct: 140 FVSTENNEPVTLHPVAYD 157
Score = 99.1 bits (236), Expect = 4e-22
Identities = 46/74 (62%), Positives = 55/74 (74%)
Frame = +3
Query: 39 GLPXRHQGLVRSQFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVY 218
G+ R + + FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VY
Sbjct: 6 GIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVY 65
Query: 219 NVTAHALGVIVNSV 260
NVT ++GV++ V
Sbjct: 66 NVTQSSVGVLIYKV 79
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 103 bits (247), Expect = 2e-23
Identities = 49/78 (62%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 VRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAH 439
V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH
Sbjct: 80 VGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAH 139
Query: 440 IVS-GTEKPVLLAPIPYE 490
VS +PV L P+ Y+
Sbjct: 140 FVSTENNEPVTLHPVAYD 157
Score = 99.1 bits (236), Expect = 4e-22
Identities = 46/74 (62%), Positives = 55/74 (74%)
Frame = +3
Query: 39 GLPXRHQGLVRSQFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVY 218
G+ R + + FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VY
Sbjct: 6 GIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVY 65
Query: 219 NVTAHALGVIVNSV 260
NVT ++GV++ V
Sbjct: 66 NVTQSSVGVLIYKV 79
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.57
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -2
Query: 463 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 299
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 298 TDIDALRYN 272
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 95 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 199
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 180 PHKVYHGKTGRV--YNVTAHALGVIVNSVFAEGLYRSASISVLSMSSTPSADKTSLRES 350
P +V+H +V YN H +GVI +FA ++ + ++ S+ D TS +S
Sbjct: 436 PGEVWHPDVNKVNVYNENDHVMGVIYFDLFAR-TGKTDGAAHFTIRSSRELDLTSFDDS 493
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 320 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 415
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 7.0
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +3
Query: 93 TIPLSTYMKVYKVGDIVDIR-----GN-GAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 254
T L +Y+ VYK G D+R GN G + G K T ++ V A I+N
Sbjct: 245 TYYLYSYLSVYKQGKADDVRFIVPTGNFGDILAGYYAKRMGLPTKQL--VIATNENDILN 302
Query: 255 SVFAEGLYRSASISVLSMSSTPSADKT 335
F G Y A + +S S SA +T
Sbjct: 303 RFFKTGRYEKADSTQVSPSGPISAKET 329
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 374 EAKAAGKTVNLKRQPAPPKAAHIVSGT 454
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.0
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 282 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 461
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 462 P 464
P
Sbjct: 115 P 115
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 394 LAGSLGFLQ*PLILFDSLKEVLSALGV 314
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 218 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 90
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 303 SMSSTPSADKTSLRE 347
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 341 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 469
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 341 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 463
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.3
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 418 WLSLQVDGLAGSLGF 374
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 207 GRVYNVTAHALGVIVNS 257
G+ YN+T+H G VN+
Sbjct: 234 GKTYNITSHVSGFYVNN 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,313
Number of Sequences: 5004
Number of extensions: 42582
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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