Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20060
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 97 8e-21
10_08_0310 - 16669565-16669822,16670558-16670794 94 5e-20
06_03_1007 + 26869731-26870429,26871262-26871387 29 1.8
01_06_1794 - 39919363-39920025 29 1.8
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323... 29 2.3
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.3
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 2.3
02_04_0461 - 23125260-23125868 29 3.1
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.1
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 4.1
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.1
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 5.4
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.4
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 7.1
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 7.1
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 9.4
08_02_0830 - 21617485-21618198 27 9.4
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 9.4
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 97.1 bits (231), Expect = 8e-21
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +3
Query: 39 GLPXRHQGLVRSQFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVY 218
GL R + L FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+TGRV+
Sbjct: 6 GLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVW 65
Query: 219 NVTAHALGVIVNSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 353
NVT A+GV +N + R + V + + ++ LR+ K
Sbjct: 66 NVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +2
Query: 245 DCQQRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 424
+ ++V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEG 134
Query: 425 PKAAHIVSGTEKPVLLAPIPYEFV 496
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 94.3 bits (224), Expect = 5e-20
Identities = 42/81 (51%), Positives = 55/81 (67%)
Frame = +3
Query: 39 GLPXRHQGLVRSQFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVY 218
GL R + L FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+TGRV+
Sbjct: 6 GLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVW 65
Query: 219 NVTAHALGVIVNSVFAEGLYR 281
NVT A+GV +N + R
Sbjct: 66 NVTKRAIGVEINKQVGNRIIR 86
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +2
Query: 245 DCQQRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 424
+ ++V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQG 134
Query: 425 PKAAHIVSGTEKPVLLAPIPYEFV 496
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGATLET-VTPIPYDVV 157
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 243 VIVNSVFAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 398
V+V V E Y S + + S S +AD + RG R+PR ARP
Sbjct: 54 VVVVEVEEEEGYESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 344 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 481
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>11_06_0187 -
21029511-21029857,21031444-21031739,21032270-21032345,
21032714-21032836,21033200-21033228,21033823-21034328
Length = 458
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 149 QRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQRVRGRIIPKRINIRVEHVKHSKCR 328
+R+W +G A S+P + R Q QQ+ + + K++ + V + +
Sbjct: 87 KRKW---EGQANGSVPGESSGRQQ----------QQKPEEKRVAKQVKVETPDVDAKQLK 133
Query: 329 QDFLKRVK---ENERLLKEAKAAGKTVNLK 409
FLK VK EN K +A GK LK
Sbjct: 134 SSFLKMVKLMNENAEQKKNYRANGKISQLK 163
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 131 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 232
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 182 TQSIPWKDRSRVQRDCSCSRC-DCQQRVRGRIIPKRINIRVEHVKHSKCRQDF 337
T+S PW+ + ++ S+C D + R R + I R ++ +C +DF
Sbjct: 382 TESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIERRGGGLEFLECNKDF 434
>02_04_0461 - 23125260-23125868
Length = 202
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +2
Query: 197 WKD-RSRVQRDCSCSR--CDCQQRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 367
WK+ R+R + SR +QR R + + + RV +K + KR + ER
Sbjct: 82 WKEARTRRASALAASRKPTPLEQRARDKSLKRAYQARVAELKEEIRQSKAAKRKQREERE 141
Query: 368 LKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 496
++ + ++ ++ PK ++ ++K L +P EF+
Sbjct: 142 KRKKENVLRSGTKLQRVTNPKTIQKIAKSKKRKQLKVVPDEFL 184
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 123 YKVGDIVDIRGNGAVQKGMPHKVY 194
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 371 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 499
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 131 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 226
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 378 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 485
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 308 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 415
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 51 RHQGLVRSQFRT-HGTIPLSTYMKVYKVGDIVDIR 152
RH L+R F TIP+ T ++VY+V D+ +R
Sbjct: 543 RHNSLLRGIFMDGKTTIPVYTVLEVYRVSDMELVR 577
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 273 LYRSASISVLSMSSTPSADKTSLRESKRM 359
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 347 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 478
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 317 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 436
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 78 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 242
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,713
Number of Sequences: 37544
Number of extensions: 299847
Number of successful extensions: 1008
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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