BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20060 (530 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 0.84 DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 3.4 DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 3.4 DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 3.4 DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 3.4 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 5.9 AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 5.9 AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 5.9 AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 7.9 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 24.2 bits (50), Expect = 0.84 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -2 Query: 466 DGFLSSTDDVGSFRGSW 416 DG SS D GS GSW Sbjct: 1064 DGITSSGSDSGSSNGSW 1080 >DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex determiner protein. Length = 186 Score = 22.2 bits (45), Expect = 3.4 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +2 Query: 143 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 241 R Q+ + + Y WK+RSR + + SR Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77 >DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.2 bits (45), Expect = 3.4 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +2 Query: 143 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 241 R Q+ + + Y WK+RSR + + SR Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77 >DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.2 bits (45), Expect = 3.4 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +2 Query: 143 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 241 R Q+ + + Y WK+RSR + + SR Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77 >DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.2 bits (45), Expect = 3.4 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +2 Query: 143 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 241 R Q+ + + Y WK+RSR + + SR Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.4 bits (43), Expect = 5.9 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +2 Query: 152 RQWCSSKGYATQSIPWKDRSRV 217 R C GY +SI W+ +RV Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530 >AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 593 Score = 21.4 bits (43), Expect = 5.9 Identities = 6/9 (66%), Positives = 6/9 (66%) Frame = -2 Query: 61 PWCRXGNPW 35 PW GNPW Sbjct: 135 PWRTCGNPW 143 >AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 646 Score = 21.4 bits (43), Expect = 5.9 Identities = 6/9 (66%), Positives = 6/9 (66%) Frame = -2 Query: 61 PWCRXGNPW 35 PW GNPW Sbjct: 188 PWRTCGNPW 196 >AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1 protein. Length = 500 Score = 21.0 bits (42), Expect = 7.9 Identities = 9/48 (18%), Positives = 18/48 (37%) Frame = -1 Query: 215 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAELR 72 H L V + CT+ + + + H++ +SS+ R Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPR 292 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 145,615 Number of Sequences: 438 Number of extensions: 2816 Number of successful extensions: 10 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 14968302 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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