Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20058
(614 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6GLJ2 Cluster: LOC443718 protein; n=4; Tetrapoda|Rep: ... 80 5e-14
UniRef50_UPI00005A2C8E Cluster: PREDICTED: similar to TWIST neig... 75 1e-12
UniRef50_Q3B726 Cluster: DNA-directed RNA polymerase I subunit R... 74 3e-12
UniRef50_Q4RKE7 Cluster: Chromosome 21 SCAF15029, whole genome s... 70 4e-11
UniRef50_Q6PHG8 Cluster: DNA-directed RNA polymerase I subunit R... 69 1e-10
UniRef50_A7RZD8 Cluster: Predicted protein; n=1; Nematostella ve... 63 6e-09
UniRef50_Q7PV20 Cluster: ENSANGP00000016750; n=1; Anopheles gamb... 57 4e-07
UniRef50_Q9VM72 Cluster: CG13773-PA; n=2; Sophophora|Rep: CG1377... 56 5e-07
UniRef50_Q16XZ3 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_O43036 Cluster: DNA-directed RNA polymerase I subunit R... 44 0.003
UniRef50_Q55FA4 Cluster: RNA polymerase I subunit; n=1; Dictyost... 42 0.015
UniRef50_Q4PEV0 Cluster: Putative uncharacterized protein; n=1; ... 40 0.036
UniRef50_Q6C2P5 Cluster: Yarrowia lipolytica chromosome F of str... 39 0.082
UniRef50_A6SBP0 Cluster: Putative uncharacterized protein; n=2; ... 38 0.14
UniRef50_Q6BX66 Cluster: Similar to CA2272|CaRPA43 Candida albic... 36 0.58
UniRef50_A3LV72 Cluster: DNA-dependent RNA polymerase I subunit ... 36 1.0
UniRef50_Q00W27 Cluster: DNA polymerase epsilon, subunit C; n=3;... 34 2.3
UniRef50_Q5K9N5 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q5CSR5 Cluster: RPB7 like OB fold RNA polymerase subuni... 33 5.4
UniRef50_A4QXX6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
>UniRef50_Q6GLJ2 Cluster: LOC443718 protein; n=4; Tetrapoda|Rep:
LOC443718 protein - Xenopus laevis (African clawed frog)
Length = 477
Score = 79.8 bits (188), Expect = 5e-14
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = +3
Query: 255 KELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHL 434
+ LNGV V+Y N ++ +G I +D IH V+AD+ IF+P G L G+VNK TH+
Sbjct: 85 ERLNGVPVAYDNIKLVGELGDIYDDLGHIHINVEADFVIFKPDCGQTLVGIVNKVAPTHI 144
Query: 435 SVLVHRVFNVVIPQPTEEPGDKWIGLVLK 521
LVH FN IP+P + P + W+ + +K
Sbjct: 145 GCLVHGCFNASIPKPPKMPIENWLRIGVK 173
>UniRef50_UPI00005A2C8E Cluster: PREDICTED: similar to TWIST
neighbor; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to TWIST neighbor - Canis familiaris
Length = 423
Score = 74.9 bits (176), Expect = 1e-12
Identities = 33/83 (39%), Positives = 51/83 (61%)
Frame = +3
Query: 255 KELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHL 434
+ L+GV ++Y N ++ +G I +D IH ++AD+ IF P G KL G+VNK S+H+
Sbjct: 162 ESLSGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGKKLMGIVNKVSSSHI 221
Query: 435 SVLVHRVFNVVIPQPTEEPGDKW 503
LVH FN IP+P + ++W
Sbjct: 222 GCLVHGCFNASIPKPEQMSTEQW 244
>UniRef50_Q3B726 Cluster: DNA-directed RNA polymerase I subunit
RPA43; n=16; Amniota|Rep: DNA-directed RNA polymerase I
subunit RPA43 - Homo sapiens (Human)
Length = 338
Score = 73.7 bits (173), Expect = 3e-12
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +3
Query: 255 KELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHL 434
+ L GV ++Y N ++ +G I +D IH ++AD+ IF P G KL G+VNK S+H+
Sbjct: 84 ESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHI 143
Query: 435 SVLVHRVFNVVIPQPTEEPGDKW 503
LVH FN IP+P + ++W
Sbjct: 144 GCLVHGCFNASIPKPEQLSAEQW 166
>UniRef50_Q4RKE7 Cluster: Chromosome 21 SCAF15029, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 21
SCAF15029, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 352
Score = 70.1 bits (164), Expect = 4e-11
Identities = 35/83 (42%), Positives = 46/83 (55%)
Frame = +3
Query: 255 KELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHL 434
+ L GV ++Y N IL G I +D +H V AD+ +FQP G KL G VNK +H+
Sbjct: 100 QSLKGVPLAYDNIRILGQYGDIVDDGGYVHMDVIADFIVFQPQKGQKLLGKVNKLGVSHV 159
Query: 435 SVLVHRVFNVVIPQPTEEPGDKW 503
LVH FN IP+P P + W
Sbjct: 160 GCLVHGCFNASIPKPNLVPMETW 182
>UniRef50_Q6PHG8 Cluster: DNA-directed RNA polymerase I subunit
RPA43; n=3; Danio rerio|Rep: DNA-directed RNA polymerase
I subunit RPA43 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 391
Score = 68.5 bits (160), Expect = 1e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = +3
Query: 261 LNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 440
L+GV V+Y N ++ G I +D IHF ++A + IF+P G++L G++NK ++H+
Sbjct: 94 LDGVPVAYDNIKVVGQHGNIYDDQGFIHFNIEASFVIFRPKNGSRLMGVINKMGASHVGC 153
Query: 441 LVHRVFNVVIPQPTEEPGDKW 503
LVH FN + +P D+W
Sbjct: 154 LVHGCFNASVMKPNALTSDQW 174
>UniRef50_A7RZD8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 159
Score = 62.9 bits (146), Expect = 6e-09
Identities = 31/80 (38%), Positives = 44/80 (55%)
Frame = +3
Query: 255 KELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHL 434
++L V+V+Y +LQ G I +++ +HF Q DY F+P IG KL G+VNK H+
Sbjct: 43 EKLRAVIVAYDKVTLLQRRGNIIDESPFLHFDAQVDYITFKPEIGNKLIGVVNKFGYDHI 102
Query: 435 SVLVHRVFNVVIPQPTEEPG 494
LVH FN I + G
Sbjct: 103 GCLVHGCFNASIAKSRTSNG 122
>UniRef50_Q7PV20 Cluster: ENSANGP00000016750; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000016750 - Anopheles gambiae
str. PEST
Length = 246
Score = 56.8 bits (131), Expect = 4e-07
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 258 ELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLS 437
+LNG+++ Y + + +R D+ +H + DY++FQP IG+ L G VN +S
Sbjct: 65 KLNGIVLGYAKIRVDNALSALRLDSPYLHVRTTIDYYVFQPRIGSTLRGTVNYVSKNFVS 124
Query: 438 VLVHRVFNVVI 470
+++RVFNV +
Sbjct: 125 AVIYRVFNVTV 135
>UniRef50_Q9VM72 Cluster: CG13773-PA; n=2; Sophophora|Rep:
CG13773-PA - Drosophila melanogaster (Fruit fly)
Length = 253
Score = 56.4 bits (130), Expect = 5e-07
Identities = 24/70 (34%), Positives = 43/70 (61%)
Frame = +3
Query: 261 LNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 440
L+G+++ KN +L +R D+ +H + AD+++F+P GA L+G+V H+S
Sbjct: 66 LDGIVLGIKNIKVLGQTAGLRADDPTMHLVINADFYVFRPKAGAILSGVVRHISRHHVSA 125
Query: 441 LVHRVFNVVI 470
+++RVFN I
Sbjct: 126 VIYRVFNTSI 135
Score = 37.9 bits (84), Expect = 0.19
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 79 IMSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLL-DYKVGKFE 255
I+ K IKF ++EL+ A+ SC+ +LA+ P+ + N K ++ LL KVG ++
Sbjct: 4 ILQKYIKFSVKELENYASSPESCVRCITTDMHLAMGPYGMANFKHALHELLIRTKVGFYD 63
>UniRef50_Q16XZ3 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 571
Score = 56.0 bits (129), Expect = 7e-07
Identities = 22/72 (30%), Positives = 46/72 (63%)
Frame = +3
Query: 255 KELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHL 434
+ ++G+++++KN IL + IR ++ IH +V +++++F+P GA + G + +L
Sbjct: 64 RTVDGIILAFKNTKILSPLSAIRPNSVRIHVKVSSNFYVFRPISGATIEGTIKYVSKNYL 123
Query: 435 SVLVHRVFNVVI 470
S +++ VFNV I
Sbjct: 124 SAVIYGVFNVTI 135
Score = 38.7 bits (86), Expect = 0.11
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +1
Query: 85 SKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFEKS 261
+K K+ + EL+ D NSC+ + T +++ P LG+I E + L K+GK++++
Sbjct: 7 TKYAKYTVEELESYVADPNSCVQKLEWTNLVSVLPKYLGDICEGVKACLTQKIGKYDRT 65
>UniRef50_O43036 Cluster: DNA-directed RNA polymerase I subunit
RPA43; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase I subunit RPA43 - Schizosaccharomyces
pombe (Fission yeast)
Length = 173
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +3
Query: 261 LNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 440
+NG++++Y N L+ + D+ V+ D +F P G L G +N +H+ +
Sbjct: 44 INGIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGL 103
Query: 441 LVHRVFNVVIPQPTEEPGDKWI 506
L+ +FN IP+ + P D WI
Sbjct: 104 LILGIFNASIPRKS-IPKD-WI 123
>UniRef50_Q55FA4 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 356
Score = 41.5 bits (93), Expect = 0.015
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 258 ELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLS 437
EL G+++SY + I D+ + + + +F+P+ L G+V + +TH+S
Sbjct: 56 ELGGIIISYYDVIHTDKEAKIFYDSPYLGMNIHVKFLVFKPFKDQILNGVVKRVSTTHIS 115
Query: 438 VLVHRVFNVVIPQ 476
+LV + IP+
Sbjct: 116 LLVFGTISASIPK 128
>UniRef50_Q4PEV0 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 364
Score = 40.3 bits (90), Expect = 0.036
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 258 ELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLS 437
+L+GVL+++ LQ+ D+A V + ++ P IG L G + +H+S
Sbjct: 112 QLSGVLITHSPTRFLQDTAVFSADSAFATASVGFECVVWTPRIGQMLEGNICLSSPSHVS 171
Query: 438 VLVHRVFNVVIP 473
+L++ +FN IP
Sbjct: 172 LLLYGLFNASIP 183
>UniRef50_Q6C2P5 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 288
Score = 39.1 bits (87), Expect = 0.082
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 309 VGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVI 470
+G N++ + D +++P +G +L G VN + +H+ +LVH FN I
Sbjct: 98 MGKFVNESPFTFMWISTDLLVWKPQVGDRLEGYVNMQTPSHIGLLVHDTFNCSI 151
>UniRef50_A6SBP0 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 323
Score = 38.3 bits (85), Expect = 0.14
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = +3
Query: 264 NGVLVSYKNPCILQ----NVGT---IRN-DNADIHFQ-VQADYFIFQPYIGAKLTGLVNK 416
NGV++SY NP + N G ++N D + + V A++ +F+P GA L G +N
Sbjct: 112 NGVILSYSNPRFAEKAFGNDGDSTLLQNLDEYAVSWAWVTAEFLLFKPEKGAWLEGYINL 171
Query: 417 KCSTHLSVLVHRVFNVVIPQPTEEPGDKWIGL 512
+ HL ++ +FN I + +W+G+
Sbjct: 172 QNEGHLGLVCWNLFNASIERARLPKEWRWVGV 203
>UniRef50_Q6BX66 Cluster: Similar to CA2272|CaRPA43 Candida albicans
CaRPA43 DNA-directed RNA polymerase I; n=3;
Saccharomycetales|Rep: Similar to CA2272|CaRPA43 Candida
albicans CaRPA43 DNA-directed RNA polymerase I -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 311
Score = 36.3 bits (80), Expect = 0.58
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 351 VQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVI 470
V D+ I++P +G L G + + ++H+ +LVH FN I
Sbjct: 122 VSVDFLIWRPQVGDTLEGYIYMQTASHIGLLVHDTFNASI 161
>UniRef50_A3LV72 Cluster: DNA-dependent RNA polymerase I subunit
A43; n=2; Pichia|Rep: DNA-dependent RNA polymerase I
subunit A43 - Pichia stipitis (Yeast)
Length = 307
Score = 35.5 bits (78), Expect = 1.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 351 VQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVI 470
+ D+ I++P +G L G + + ++HL +L+H FN I
Sbjct: 122 ITVDFLIWRPQVGDVLEGYIYMQTASHLGLLIHDTFNASI 161
>UniRef50_Q00W27 Cluster: DNA polymerase epsilon, subunit C; n=3;
Ostreococcus|Rep: DNA polymerase epsilon, subunit C -
Ostreococcus tauri
Length = 569
Score = 34.3 bits (75), Expect = 2.3
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 312 GTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVI 470
G + + + + V+AD +F P G++L G VNK + LV FNV I
Sbjct: 101 GRVLHASGHVDVCVEADCDVFTPVRGSRLVGTVNKIAHDFIGALVLDKFNVAI 153
>UniRef50_Q5K9N5 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 360
Score = 34.3 bits (75), Expect = 2.3
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 258 ELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLS 437
E+ GVL+++ + + I N+ V+ + P IG KL G+ + +HLS
Sbjct: 90 EVKGVLIAHWDHSFDDDTAKIINECPFEVVNVEFHAIYWAPKIGQKLRGIHSISSPSHLS 149
Query: 438 VLVHRVFNVVIP 473
++ FNV IP
Sbjct: 150 LIFAGAFNVSIP 161
>UniRef50_Q5CSR5 Cluster: RPB7 like OB fold RNA polymerase subunit;
n=2; Cryptosporidium|Rep: RPB7 like OB fold RNA
polymerase subunit - Cryptosporidium parvum Iowa II
Length = 256
Score = 33.1 bits (72), Expect = 5.4
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 258 ELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADY--FIFQPYIGAKLTGLVNKKCSTH 431
E GV + + + G + + + F V ++ +F+P IG L ++ +H
Sbjct: 115 EFQGVWICFHKISTVNTYGYVPDCEPNGSFLVNVEFKALVFKPKIGELLICRISHVSPSH 174
Query: 432 LSVLVHRVFNVVIPQPTEEPGDKW 503
+S + + + NVVIP + + GD++
Sbjct: 175 VSGITYGILNVVIPMKSFK-GDEY 197
>UniRef50_A4QXX6 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 404
Score = 33.1 bits (72), Expect = 5.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 357 ADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPTEEPGDKWIGLVLK 521
A+ ++F P GA + G+VN + HL V+ FN I G K+I +V K
Sbjct: 320 AEVYLFVPRRGAWMEGVVNLQSEGHLGVVCWNRFNASIEANRVPEGWKFIDVVQK 374
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,703,843
Number of Sequences: 1657284
Number of extensions: 10282516
Number of successful extensions: 20194
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20189
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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