Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20057
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.41
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.55
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 31 0.55
At3g61390.2 68416.m06872 U-box domain-containing protein several... 31 0.55
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 31 0.55
At1g12380.1 68414.m01431 expressed protein 30 0.95
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 30 0.95
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 1.7
At4g01735.1 68417.m00225 expressed protein ; expression supporte... 29 1.7
At1g33060.2 68414.m04076 no apical meristem (NAM) family protein... 29 1.7
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein... 29 1.7
At5g54050.1 68418.m06722 DC1 domain-containing protein 29 2.2
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 29 2.2
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 2.9
At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr... 29 2.9
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 28 3.8
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 27 6.7
At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast, pu... 27 6.7
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 6.7
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 27 6.7
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 27 8.9
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 27 8.9
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 27 8.9
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 8.9
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 27 8.9
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 27 8.9
At2g36890.1 68415.m04524 myb family transcription factor (MYB38)... 27 8.9
At1g26580.1 68414.m03238 expressed protein similar to putative M... 27 8.9
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 360 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 497
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 321 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 476
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 31.1 bits (67), Expect = 0.55
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 252 VKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 425
V L+ V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D N
Sbjct: 67 VTGALDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 279 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 455
+ +E EE+K L ++ G + +E T N H E + + + +DI GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376
Query: 456 QEVSDGIGKWYAR 494
+ I +W+ R
Sbjct: 377 TYEGEAISRWFER 389
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 454 SRKCQTVLENGTLVPSKLRAPGQLATFP 537
SRK Q + NG P + APGQ + FP
Sbjct: 1022 SRKLQGYIRNGAFEPRRWTAPGQFSLFP 1049
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 30.3 bits (65), Expect = 0.95
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 309 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 488
PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667
Query: 489 ARTEQIKSSRP 521
AR Q+K P
Sbjct: 668 ARAVQMKERDP 678
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 30.3 bits (65), Expect = 0.95
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = -2
Query: 218 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSGMAGCACGEHEY 39
GMSM + +FA RL SM L + S ++ L G+ SA TL G A G H Y
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCGQAH---GAHRY 125
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 261 DLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 359
DLE +VPDE EEIK P + G H HE
Sbjct: 261 DLE--DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At4g01735.1 68417.m00225 expressed protein ; expression supported
by MPSS
Length = 186
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 40 YSCSPHAQPAIPDKVPEAEDKPLNVVDNLSSEQELIDQAN 159
+ C P+ Q VP + NVV NL+S+Q+L +Q N
Sbjct: 91 HCCQPYHQNNDLSVVPMETQQQHNVVGNLASQQQLEEQNN 130
>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 652
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 572 HSTFVSERRNF-LGNVASWPGALNLLGTSVPF 480
H+ ++R++F L N+ WPG LL T PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375
>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 648
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 572 HSTFVSERRNF-LGNVASWPGALNLLGTSVPF 480
H+ ++R++F L N+ WPG LL T PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 264 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 359
LE +VP+E EEIK P + G H HE
Sbjct: 272 LELEDVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 249 VVKSDLENVEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 395
V +S++EN+ PD++EE I +V+L N +H+ HE+ + D ++
Sbjct: 448 VFQSEVENLAYPDKHEESIAFGMVNLSNES-SRHESHESSFSDQLGDMDQ 496
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 279 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 434
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 634
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 155 AWSMSSCSLDKLSTTFKGLS-SASGTLSGMAGCACGEHEYS*QQGRV 18
+W+M SCS D L S S SGTLSG G + S Q +
Sbjct: 64 SWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNI 110
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +1
Query: 73 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 252
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 253 LRVI*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 360
L+V + + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 264 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 359
LE +VP+E EEI+ P + + G H HE
Sbjct: 250 LELEDVPEEEEEIEDPFKVINDKGDIIHFSHE 281
>At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast,
putative identical to SP|P82281|TL29_ARATH (EC
1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase
- Spinacia oleracea, (gi:1669585); contains Pfam domain
PF00141: Peroxidase; contains TIGRfam domain TIGR01409:
Tat (twin-arginine translocation) pathway signal
sequence; identical to ascorbate peroxidase APX4
(AT4g09010) mRNA, partial cds GI:31980499
Length = 349
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 451 ASRKCQTVLENGTLVPSKLRAPGQLATFPRKFRRSD 558
A RKC E G L+ + + GQ F R F RSD
Sbjct: 199 AIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSD 234
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 67 AIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDID------NSLRANKKEVIDIPVKV 228
+I DK+P+ E + N+++ + + + +A ++D N L E++D K
Sbjct: 746 SIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIYKD 805
Query: 229 IVEEI-KPSLRVI*KT-LKCRMKMRKSR 306
+ + P++RV +T LK K + R
Sbjct: 806 FSQSVGVPNIRVYEETQLKTAEKEAEER 833
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 270 NVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 449
N + EN+ + + + D+R H+EHE + + + +V VK+ + T + LRQ
Sbjct: 526 NESLVQENQMLLQQINDIRENFENFHKEHEELEVKAKAELKVLVKEVKS-LRTTQSDLRQ 584
>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 596
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 264 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 359
LE +VP+E EEI+ P + G H HE
Sbjct: 265 LELEDVPEEEEEIEDPFKVINEKGDIIHFSHE 296
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 285 DENEEIKRPLVDL-RNPGPPQHQEHETQNPEHHE 383
D + + PL + NP PPQ Q+ Q + H+
Sbjct: 198 DPSPQTFEPLYQISNNPSPPQQQQQHQQQQQQHK 231
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 270 NVEVPDENEEIKRPLVDLRNPGPP-QHQEHETQNPEHHEDAEKIVSSVKN-DINTAEIAL 443
N P + ++ ++ + P PP Q QE E + + E + ++V NTAE AL
Sbjct: 213 NPSPPQQQQQHQQQQQQHKPPPPPIQQQERENSSTDAPPQPETVTATVPAVQTNTAE-AL 271
Query: 444 RQGFQEV 464
R+ +E+
Sbjct: 272 RERKEEI 278
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 70 IPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKK 201
I + E + P +V +NL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 261 DLENVEVPDENEEIKRP-LVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEI 437
DL V VPD NEE P + G P + E +H ++ + VS+ + N +
Sbjct: 421 DLNVVSVPDLNEEFTPPDSSGGEDNGVPLNSLAEADGGDHDDNCDDAVSNGRRKNNNDCL 480
Query: 438 ALRQG 452
+ G
Sbjct: 481 VISDG 485
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 79 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 231
KV EAE K L +++ +LID A ++ I+N + E+ + VK++
Sbjct: 441 KVGEAE-KNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKIL 490
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 79 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 231
KV EAE K L +++ +LID A ++ I+N + E+ + VK++
Sbjct: 441 KVGEAE-KNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKIL 490
>At2g36890.1 68415.m04524 myb family transcription factor (MYB38)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 298
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 342 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEI 437
+H++H+ + H ED + S V D EI
Sbjct: 237 EHRDHDDHHHHHEEDERSMTSVVMEDYGMEEI 268
>At1g26580.1 68414.m03238 expressed protein similar to putative MYB
family transcription factor GB:AAD17429 GI:4335752 from
[Arabidopsis thaliana]
Length = 493
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 339 PQHQEHETQNPEHHEDAEKIVSSVKND 419
P HQ + P HHE+ E+ VS ND
Sbjct: 346 PLHQGTKKVYPLHHEEGEEDVSHSSND 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,393,201
Number of Sequences: 28952
Number of extensions: 192680
Number of successful extensions: 859
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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