BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20053 (739 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00037-1|AAA50661.2| 495|Caenorhabditis elegans Adenosine deami... 29 3.4 AF051275-1|AAC25097.1| 495|Caenorhabditis elegans putative RNA ... 29 3.4 Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 28 7.9 Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 28 7.9 AL033514-12|CAA22099.1| 208|Caenorhabditis elegans Hypothetical... 28 7.9 AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 28 7.9 >U00037-1|AAA50661.2| 495|Caenorhabditis elegans Adenosine deaminase that acts onrna protein 2 protein. Length = 495 Score = 29.1 bits (62), Expect = 3.4 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +2 Query: 134 DVSFPSKILKKTSFSHSVDVLSCVKQSVVYPLKYK 238 D++ PS++ KK + + + K SV YP+ Y+ Sbjct: 420 DITTPSRLCKKNMAELMITICTLTKTSVDYPISYE 454 >AF051275-1|AAC25097.1| 495|Caenorhabditis elegans putative RNA adenosine deaminase protein. Length = 495 Score = 29.1 bits (62), Expect = 3.4 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +2 Query: 134 DVSFPSKILKKTSFSHSVDVLSCVKQSVVYPLKYK 238 D++ PS++ KK + + + K SV YP+ Y+ Sbjct: 420 DITTPSRLCKKNMAELMITICTLTKTSVDYPISYE 454 >Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical protein C02F4.1 protein. Length = 1781 Score = 27.9 bits (59), Expect = 7.9 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 342 DFFLLHPKILHKNINFVLFR-RVFYGSFRFC 253 D +L K++HK++ FV+ + F+ + +FC Sbjct: 994 DMIMLQNKVIHKSLRFVMSAVQTFFSNDKFC 1024 >Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein C02F4.1 protein. Length = 1781 Score = 27.9 bits (59), Expect = 7.9 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 342 DFFLLHPKILHKNINFVLFR-RVFYGSFRFC 253 D +L K++HK++ FV+ + F+ + +FC Sbjct: 994 DMIMLQNKVIHKSLRFVMSAVQTFFSNDKFC 1024 >AL033514-12|CAA22099.1| 208|Caenorhabditis elegans Hypothetical protein Y75B8A.11 protein. Length = 208 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -2 Query: 309 KNINFVLFRRVFYGSFRFCSNAKNLYFNG*TT 214 KN++F LF R FY + C++ KN+ T+ Sbjct: 104 KNVSFSLFFRAFYLTVPACTSKKNVLLTSTTS 135 >AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. Length = 1781 Score = 27.9 bits (59), Expect = 7.9 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 342 DFFLLHPKILHKNINFVLFR-RVFYGSFRFC 253 D +L K++HK++ FV+ + F+ + +FC Sbjct: 994 DMIMLQNKVIHKSLRFVMSAVQTFFSNDKFC 1024 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,413,808 Number of Sequences: 27780 Number of extensions: 277669 Number of successful extensions: 612 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 612 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1735436670 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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