Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20051
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 127 9e-30
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 33 0.26
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.34
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.79
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 31 1.4
SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_54127| Best HMM Match : Keratin_B2 (HMM E-Value=2.8) 29 5.6
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 5.6
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42) 28 7.4
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09) 28 9.8
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 127 bits (307), Expect = 9e-30
Identities = 60/107 (56%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +2
Query: 461 CVWCVCTN*NSTA-SGYAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 637
CV VC + AERIKP+LFMNKMDR YQTF RIVE++NVIIA
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIA 191
Query: 638 TYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYATNSRL 778
TY+D+ GPMG ++V P KG+V FGSGLHGWAFTLKQ SE+Y+ ++
Sbjct: 192 TYSDEDGPMGNIQVGPEKGTVAFGSGLHGWAFTLKQISEIYSAKFKI 238
Score = 124 bits (300), Expect = 6e-29
Identities = 59/65 (90%), Positives = 62/65 (95%)
Frame = +1
Query: 61 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 240
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 241 DEQDR 255
DEQDR
Sbjct: 61 DEQDR 65
Score = 112 bits (270), Expect = 3e-25
Identities = 57/85 (67%), Positives = 65/85 (76%)
Frame = +3
Query: 255 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 434
CITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 66 CITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVT 123
Query: 435 DGALXXXXXXXXXXXQTETVLRQAM 509
DGAL QTETVLRQA+
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAI 148
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +2
Query: 683 PSKGSVGFGSGLHGWAFTLKQFSEMYATNSRL 778
P KG+V FGSGLHGWAFTLKQ SE+Y+ ++
Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKI 65
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 112 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 198
+RN S++AHVDHGKSTL D L+ G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/83 (21%), Positives = 41/83 (49%)
Frame = +2
Query: 512 ERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSK 691
E + + +NK+DR Y + +++ VN +++ +++ ++ + P
Sbjct: 180 ENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEGA---DDLVISPLL 236
Query: 692 GSVGFGSGLHGWAFTLKQFSEMY 760
G+V F S + + FTL F+++Y
Sbjct: 237 GNVCFASSSYHFCFTLLSFAKLY 259
Score = 35.1 bits (77), Expect = 0.064
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +1
Query: 58 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 237
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 238 KDEQDRASPLNLRPSLCSSSLKRKI 312
+ A NL ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +3
Query: 264 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 443
IK A S F E+E + + + + + IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106
Query: 444 LXXXXXXXXXXXQTETVL 497
+ QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 97 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 210
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 121 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 222
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 345 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
K G I ID+PGH F+S VTD + QT +R AM
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 189
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 121 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 222
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 506 YAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 640
+ E I+P L +NK+DR + Q+I+E VN I T
Sbjct: 126 WLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 515 ARHSLTQYCFSLYTHTRHTVNNHKGSISDT 426
ARHS TQY + ++ T+H+ H + DT
Sbjct: 81 ARHSTTQYSTTQHSTTQHSTTQHSTTQHDT 110
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -1
Query: 478 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 308
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 307 FSSSSK 290
SS K
Sbjct: 672 MGSSDK 677
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 151 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNL-RPSLCSSSLKR 306
K+ + D+LV GI+ R G +TD + +RA+ R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234
>SB_54127| Best HMM Match : Keratin_B2 (HMM E-Value=2.8)
Length = 289
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = -1
Query: 514 LGIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 335
LGI S C + DT + T + + +E ++T P E I L+ P R
Sbjct: 93 LGIPVSPNDSTCRQSTDTSISITTSSQAQDDITIVAEVQATQP-EVIDLVSTP--TIRRG 149
Query: 334 SGFVMNTKSFSSS 296
S FV++ S SS
Sbjct: 150 SSFVVDLTSEPSS 162
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 37 KNHK-PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 213
K H+ P + T R M+ + N +++ GK+ T ++ +AG G
Sbjct: 139 KRHEVPPHIYAITDTAYRSMLQDREN-QSILCTGESGAGKTENTKKVIQYLAAVAGHSYG 197
Query: 214 ETRFTDTRKDEQDRASPLNLRPSLCSSSLKRKI 312
+ T + ++ ++ P ++ + C L R +
Sbjct: 198 KVHATPQKTEKGGKSKPTSMTQTKCVGDLLRHV 230
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 439 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 317
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 717 RPDPKPTEPLLGSTRTSPMGPPSS 646
+P PK T P+ G+ + PMGPP S
Sbjct: 641 KPRPKSTPPM-GAVQVLPMGPPPS 663
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 496 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 356
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 478 THTPDTQSTTTRAPSVTRSAAVTSEEKST 392
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
Length = 457
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 427 VSLMEPLWLLTVCLVCVYKLKQYCVRLCRAHQAYSVHEQNGPCS 558
+S+ P+ L VCL+ VY + ++ ++ HQ+ H+ GP S
Sbjct: 114 ISICAPVAALIVCLIIVYMIFRHLMKHHAHHQSVPRHDL-GPVS 156
>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
Length = 584
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 760 IHLRELFEGESPPMKTRPETNRALARVDTH-LTHGTTIIVICGYNDVNI 617
+ LRE+ EG PP K + +L+ D+ T G+T++ +D ++
Sbjct: 307 VELREVLEGMVPPEKVESALSASLSLTDSEPSTGGSTVLAEIKVSDASM 355
>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 681 STRTSPMGPPSSLYVAIMTLTFSTIRWNV 595
+T T P PP+SLY + + T+ W+V
Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -3
Query: 485 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 393
S Y+ + HT+N+H+ + + +T C+C ++ ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,781,746
Number of Sequences: 59808
Number of extensions: 553383
Number of successful extensions: 1895
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -