Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20051
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 99 3e-21
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 56 3e-08
At5g13650.2 68418.m01585 elongation factor family protein contai... 55 6e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 54 1e-07
At5g13650.1 68418.m01584 elongation factor family protein contai... 53 2e-07
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 51 7e-07
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 51 7e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 50 2e-06
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 4e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 4e-06
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 48 5e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 48 7e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 46 4e-05
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At1g19390.1 68414.m02412 wall-associated kinase, putative simila... 31 0.86
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 1.1
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 1.1
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 30 1.5
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro... 30 1.5
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 30 1.5
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 2.0
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 2.0
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 3.5
At1g75800.1 68414.m08805 pathogenesis-related thaumatin family p... 29 3.5
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi... 29 3.5
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 4.6
At3g06620.1 68416.m00769 protein kinase family protein contains ... 29 4.6
At1g66310.1 68414.m07530 F-box family protein contains F-box dom... 29 4.6
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 28 8.0
At1g66300.1 68414.m07529 F-box family protein contains F-box dom... 28 8.0
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/66 (72%), Positives = 53/66 (80%)
Frame = +1
Query: 58 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 237
MV FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 1 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
Query: 238 KDEQDR 255
DE +R
Sbjct: 61 ADEAER 66
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +2
Query: 461 CVWCVCTN*NSTA-SGYAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 637
C+ VC + ERI+P+L +NKMDR YQTF R++EN NVI+A
Sbjct: 131 CIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190
Query: 638 TYNDDGGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYAT 766
TY D +G+V+V P KG+V F +GLHGWAFTL F++MYA+
Sbjct: 191 TYEDP--LLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231
Score = 89.8 bits (213), Expect = 2e-18
Identities = 49/84 (58%), Positives = 60/84 (71%)
Frame = +3
Query: 258 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 437
ITIKST IS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVTAALR+TD
Sbjct: 68 ITIKSTGISLYYEMTDESLKSFTGA--RDGNE--YLINLIDSPGHVDFSSEVTAALRITD 123
Query: 438 GALXXXXXXXXXXXQTETVLRQAM 509
GAL QTETVLRQA+
Sbjct: 124 GALVVVDCIEGVCVQTETVLRQAL 147
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 354 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 506
K + +NLIDSPGH+DF SEV+ A R++DGAL QT VLRQA
Sbjct: 72 KDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQA 122
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 106 RNIRNMSVIAHVDHGKSTLTDSLV--SKAGIIAGARAGETRFTDTRKDEQDRASPLNLRP 279
R +RN+ ++AHVDHGK+TL D L+ S G++ AG+ RF D +EQ RA + ++
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRA--ITMKS 64
Query: 280 SLCSSSLKRK 309
S S SLK K
Sbjct: 65 S--SISLKYK 72
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 24/111 (21%)
Frame = +2
Query: 506 YAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDD----------G 655
+ E++ P L +NK+DR Y RIV VN I++ Y +
Sbjct: 123 WIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVHEVNGIVSAYKSEKYLSDVDSILA 182
Query: 656 GPMGEVRVD--------------PSKGSVGFGSGLHGWAFTLKQFSEMYAT 766
P GE+ + P KG+V F L GW F + +F+ YA+
Sbjct: 183 SPSGELSAESLELLEDDEEVTFQPQKGNVVFVCALDGWGFGIAEFANFYAS 233
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/69 (33%), Positives = 44/69 (63%)
Frame = +1
Query: 49 PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT 228
PS +V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R
Sbjct: 62 PSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIM 121
Query: 229 DTRKDEQDR 255
D+ E++R
Sbjct: 122 DSNDLERER 130
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 354 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 144 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 195
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +3
Query: 267 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 446
+ TA + E E++ + IT+ +K IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 131 EGTATMDWMEQEQERGITITSAATTTFWDK-HRINIIDTPGHVDFTLEVERALRVLDGAI 189
Query: 447 XXXXXXXXXXXQTETVLRQA 506
Q+ETV RQA
Sbjct: 190 CLFDSVAGVEPQSETVWRQA 209
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 106 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDR 255
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQER 145
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/54 (37%), Positives = 38/54 (70%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 255
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERER 129
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 354 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 143 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 194
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 342 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R A+
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAI 258
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +2
Query: 527 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGF 706
++ +NK+DR Y + +E +N I+ + G + +DP+ G+V F
Sbjct: 265 VVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDLP--LIDPAAGNVCF 322
Query: 707 GSGLHGWAFTLKQFSEMYA 763
SG GW+FTL+ F++MYA
Sbjct: 323 ASGTAGWSFTLQSFAKMYA 341
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 88 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDR 255
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQER 188
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 342 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R A+
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAI 258
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +2
Query: 527 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGF 706
++ +NK+DR Y + +E +N I+ + G + +DP+ G+V F
Sbjct: 265 VVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDLP--LIDPAAGNVCF 322
Query: 707 GSGLHGWAFTLKQFSEMYA 763
SG GW+FTL+ F++MYA
Sbjct: 323 ASGTAGWSFTLQSFAKMYA 341
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 88 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDR 255
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQER 188
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +1
Query: 109 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRASPLNLR 276
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R + L+
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERERGITIKLQ 139
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 360 FLINLIDSPGHVDFSSEVTAALRVTDGAL 446
F +NLID+PGHVDFS EV+ +L +GAL
Sbjct: 152 FCLNLIDTPGHVDFSYEVSRSLAACEGAL 180
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 354 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 503
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 195
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 354 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 503
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 195
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +3
Query: 342 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAM 509
+ K +L N++D+PG+V+FS E+TA+LR+ DGA+ TE +R A+
Sbjct: 189 DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAI 244
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = +2
Query: 527 ILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVRVDPSKGSVGF 706
++ +NK+DR Y + +E +N I+ + + + +DP+ G+V F
Sbjct: 251 VVVINKVDRLITELKLPPRDAYYKLRYTIEVINNHISAASTNAADLP--LIDPAAGNVCF 308
Query: 707 GSGLHGWAFTLKQFSEMYA 763
SG GW+FTL+ F+ MYA
Sbjct: 309 ASGTAGWSFTLQSFARMYA 327
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 88 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDR 255
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQER 174
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 258 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 437
IT+K+ +MF+E + +D + G+L+NLID+PGHVDFS EV+ +L
Sbjct: 112 ITVKAQTATMFYENKVED-----------QEASGYLLNLIDTPGHVDFSYEVSRSLSACQ 160
Query: 438 GAL 446
GAL
Sbjct: 161 GAL 163
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +1
Query: 112 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 249
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D + E+
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLDKLQRER 110
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +1
Query: 64 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 243
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 244 EQDRASPLN 270
E+ R +N
Sbjct: 123 ERARGITIN 131
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 189
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 189
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 189
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 94 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 189
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
Biol. 39 (6), 1189-1196 (1999))
Length = 788
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 240 GRTRPCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGF-LINLIDS 383
G+ RPC+ T + +E LV I N D + E+G +IN+ DS
Sbjct: 709 GKKRPCMRKVFTDLEKILASQEDSLVNIENDDGADDEEEGMTMINIDDS 757
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 493 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 395
T S T PD ST T APSVT+ + + EK+
Sbjct: 383 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 493 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 395
T S T PD ST T APSVT+ + + EK+
Sbjct: 644 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 118 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 255
N+ I HVDHGK+TLT ++ A+A D +E+ R
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR 114
>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
protein low similarity to SP:P80728 Mavicyanin
{Cucurbita pepo}; contains Pfam profile PF02298:
Plastocyanin-like domain
Length = 163
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 714 PDPKPTEPLLGSTRTSPMGPPSSLYVAIMTLTFSTI 607
P P P+ P ++ T+P+ PP+++ AI+ F +
Sbjct: 126 PQPPPSAPTNFTSTTTPLIPPNAITAAILIFAFKAL 161
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 121 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 222
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 131 SPTSITASQPSRTRWFPRPVSLLVRE 208
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 118 NMSVIAHVDHGKSTLTDSLVSKAGIIA 198
N++++ HVD GKSTL+ L+ G I+
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLGRIS 267
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 131 SPTSITASQPSRTRWFPRPVSLLVRE 208
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At1g75800.1 68414.m08805 pathogenesis-related thaumatin family
protein similar to receptor serine/threonine kinase PR5K
[Arabidopsis thaliana] GI:1235680; contains Pfam
profile: PF00314 Thaumatin family
Length = 330
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 714 PDPKPTEPLLGSTRTSPMGPPSSLYVAIMT 625
PDPKPT P G++ T+P G S+ + + T
Sbjct: 262 PDPKPTTP-TGTSSTTPAGDSSTTWSPVDT 290
>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 970
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 698 VGFGSGLHGWAFTLKQFSEMYATNS 772
+G G G+HGWA L+ E+ N+
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNA 332
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 121 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 213
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
>At3g06620.1 68416.m00769 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 773
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -1
Query: 571 LELKKSTVHFVHEQNRLDALGIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 392
LEL++S H E +RL + + SV H P ++ APS +S A + S
Sbjct: 14 LELEESQEHLKQEMSRLKVSTELRQRSHSVSPHRPARRNIGEGAPSWRKSGAASFRNASP 73
Query: 391 CPGES 377
ES
Sbjct: 74 LRKES 78
>At1g66310.1 68414.m07530 F-box family protein contains F-box domain
Pfam:PF00646
Length = 442
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 621 LTSL*PHITMMVVPWVRCVSTLARALLVSGLVFMGGLS 734
LTSL P + ++V+ WV+ + LA +L+SG + + L+
Sbjct: 161 LTSL-PCVKVIVLEWVKFANDLALEMLISGCLVLESLT 197
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 683 GRHAPHPWDHHHR 645
G HAPHP+D+H R
Sbjct: 375 GPHAPHPYDYHPR 387
>At1g66300.1 68414.m07529 F-box family protein contains F-box domain
Pfam:PF00646
Length = 456
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +3
Query: 636 PHITMMVVPWVRCVSTLARALLVSGLVFMGGLS---PSNNSLRCMR 764
P + ++V+ WV+ + LA +L+SG + + L+ +N++++ +R
Sbjct: 175 PSVKVIVLDWVKFANDLALEMLISGCLVLKSLTLCRSNNDNVKVLR 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,813
Number of Sequences: 28952
Number of extensions: 376417
Number of successful extensions: 1278
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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