Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20047
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amin... 31 0.96
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 29 3.9
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 29 3.9
Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical p... 27 8.9
EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein. 27 8.9
>Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical protein
ZK829.2 protein.
Length = 905
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 413 PLDSCSACCPHRKWLHASIHSADRYKRNNAKIIASKGKLP---PPSNAASTPNTAIA 574
PL+ C + +H + ++ K N + +A+KG+LP PPS + TPN+ I+
Sbjct: 846 PLEPCRSLAQISSQMHTAEYADPPGKSNKSPQVAAKGELPSAAPPS--SRTPNSDIS 900
>Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amino
acid decarboxylaseprotein.
Length = 625
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 413 PLDSCSACCPHRKWLHASIHSADRYKRNNAKIIASKGKLP---PPSNAASTPNTAIA 574
PL+ C + +H + ++ K N + +A+KG+LP PPS + TPN+ I+
Sbjct: 566 PLEPCRSLAQISSQMHTAEYADPPGKSNKSPQVAAKGELPSAAPPS--SRTPNSDIS 620
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -1
Query: 314 NVDRRFGHKPVDSEVTFFKFLSLSVTSMISLWILDSGSSFKSESPMVKLVTQSDIRMGRK 135
+V++RF + ++ +T+ + SL + S+ L +SFK E VK + + +
Sbjct: 3048 SVEKRFAYNLLEKLITYLEQASLKMKSVKPSQELTRRNSFKKEGQDVKFFEKVVLPLMHA 3107
Query: 134 LIIAHKCFTVSTS 96
AHK + + S
Sbjct: 3108 YFNAHKNYFLEGS 3120
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -1
Query: 314 NVDRRFGHKPVDSEVTFFKFLSLSVTSMISLWILDSGSSFKSESPMVKLVTQSDIRMGRK 135
+V++RF + ++ +T+ + SL + S+ L +SFK E VK + + +
Sbjct: 3053 SVEKRFAYNLLEKLITYLEQASLKMKSVKPSQELTRRNSFKKEGQDVKFFEKVVLPLMHA 3112
Query: 134 LIIAHKCFTVSTS 96
AHK + + S
Sbjct: 3113 YFNAHKNYFLEGS 3125
>Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical
protein T14G10.7 protein.
Length = 544
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 246 EGKEFKEGHFRVNRLMSESTIDVNHQNGHMNGDADEKISRTLNRAVSTSH 395
+ +E ++ RV L+SE+ IDV H N + D +K+ A+ SH
Sbjct: 190 KSEEKQKASTRVTDLVSETLIDVPHLNSIVRRDLRQKMQPWQIAALPLSH 239
>Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 118 LCAIISFLPIRISDCVTSFTMGDSLLKEDPLSRIQREIIEVTERERNLKKVTSESTGLCP 297
LC +FLP+R+ C + S P+ ++ + +E RE K + P
Sbjct: 449 LCNAPTFLPLRLHCCQLLIQLQASCTNYIPILQVSCDCLEELARELKSKPKPVKGAVKLP 508
Query: 298 NLRSTL 315
++ TL
Sbjct: 509 DIECTL 514
>Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 118 LCAIISFLPIRISDCVTSFTMGDSLLKEDPLSRIQREIIEVTERERNLKKVTSESTGLCP 297
LC +FLP+R+ C + S P+ ++ + +E RE K + P
Sbjct: 449 LCNAPTFLPLRLHCCQLLIQLQASCTNYIPILQVSCDCLEELARELKSKPKPVKGAVKLP 508
Query: 298 NLRSTL 315
++ TL
Sbjct: 509 DIECTL 514
>Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 118 LCAIISFLPIRISDCVTSFTMGDSLLKEDPLSRIQREIIEVTERERNLKKVTSESTGLCP 297
LC +FLP+R+ C + S P+ ++ + +E RE K + P
Sbjct: 449 LCNAPTFLPLRLHCCQLLIQLQASCTNYIPILQVSCDCLEELARELKSKPKPVKGAVKLP 508
Query: 298 NLRSTL 315
++ TL
Sbjct: 509 DIECTL 514
>EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 118 LCAIISFLPIRISDCVTSFTMGDSLLKEDPLSRIQREIIEVTERERNLKKVTSESTGLCP 297
LC +FLP+R+ C + S P+ ++ + +E RE K + P
Sbjct: 449 LCNAPTFLPLRLHCCQLLIQLQASCTNYIPILQVSCDCLEELARELKSKPKPVKGAVKLP 508
Query: 298 NLRSTL 315
++ TL
Sbjct: 509 DIECTL 514
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,316
Number of Sequences: 27780
Number of extensions: 293998
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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