Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20041
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    36   0.045
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    29   2.9  
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           28   9.0  
02_04_0612 + 24370446-24373044,24373135-24373541                       28   9.0  

>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 399 HLDVQPALKSDGWETEPFELV---ERNEKLYGRGSTDDKG 509
           H+DV PA   D W+ +PF L    E  +KL GRG+TD  G
Sbjct: 99  HMDVVPA-NPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLG 137


>03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,
            5753632-5753820,5753911-5754013,5754087-5754269,
            5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 541  GIDGMQPTKYRPLSSVEPLPYNFSLRSTSSKGSVSHPSDFNAGCTS 404
            G DG  P ++     V+ LP N ++++ SS  +V HP D NA  T+
Sbjct: 946  GNDGSVP-QFERNEGVDQLPVNIAVQNFSSLNNVHHP-DINATSTA 989


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 177 RSSSHSIRFM*CEISCGLHPYGSLDADKLKEVGATTELRDVGFQTID 317
           R   HS+R     +   LH Y SL+   ++     TELR++ +   D
Sbjct: 34  RREIHSLRSELSNMQAALHKYASLEDPDIQVKAWITELRELAYDIED 80


>02_04_0612 + 24370446-24373044,24373135-24373541
          Length = 1001

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 631 ISCQAFGTRFLHTFENEL-QIDRQLSTSALIGIDGMQPTKYR 509
           IS Q+FG  FL    N+L Q  R  S + LIG  G   T YR
Sbjct: 658 ISSQSFGENFLKVSYNDLAQATRNFSEANLIG-KGSYGTVYR 698


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,594
Number of Sequences: 37544
Number of extensions: 428725
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)