BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20041 (743 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 34 0.005 AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 26 1.1 AY785361-1|AAV52865.1| 960|Anopheles gambiae male-specific tran... 25 2.5 AJ010299-1|CAA09070.1| 722|Anopheles gambiae stat protein. 23 7.5 >AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative differentiation regulator protein. Length = 1283 Score = 33.9 bits (74), Expect = 0.005 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Frame = -2 Query: 484 PYNFSLRSTSSKGSVSHPSDFNAGCTS-K*P*IQTVFFFGSLPNTPTKTGGS---*TSLP 317 P+ L TSSK + +HPS A S P + T G NTP T+ Sbjct: 726 PHGAPLALTSSKSASTHPSPHPATRASPSSPIVATSSSGGGGSNTPNSAAAPHPYYTAAA 785 Query: 316 SIV*KPTSLNSVVAPTSFNLSASSEPYGCNPHDISH 209 P SL+S P + +S P G H + H Sbjct: 786 MAAASPLSLSSKAPPHPHSALSSHSPVGAGSHHLHH 821 >AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. Length = 1187 Score = 26.2 bits (55), Expect = 1.1 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +1 Query: 55 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQL 171 YHQ + + K+ +K EI K ++NKD Y ++ Sbjct: 891 YHQRDKLLKQNDELKLEIKKKENEITKVRNENKDGYDRI 929 >AY785361-1|AAV52865.1| 960|Anopheles gambiae male-specific transcription factor FRU-MA protein. Length = 960 Score = 25.0 bits (52), Expect = 2.5 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -2 Query: 253 ASSEPYGCNPHDISHH 206 AS PYG H +SHH Sbjct: 697 ASGSPYGGGGHHLSHH 712 >AJ010299-1|CAA09070.1| 722|Anopheles gambiae stat protein. Length = 722 Score = 23.4 bits (48), Expect = 7.5 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +1 Query: 19 PATKQLVPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKD 156 P++ Q P Q S SSK + L EI+K+ +N D Sbjct: 666 PSSNQSSSSTPNAEQSPSASSKDTFSNEYVLTNLDEIYKFEIENDD 711 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 837,023 Number of Sequences: 2352 Number of extensions: 17716 Number of successful extensions: 38 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 38 length of database: 563,979 effective HSP length: 63 effective length of database: 415,803 effective search space used: 76507752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -