Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20041
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 105 3e-23
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 91 1e-18
Z92829-11|CAE17737.1| 257|Caenorhabditis elegans Hypothetical p... 33 0.28
Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z11795-1|CAA77838.1| 130|Caenorhabditis elegans pceh16-1 protei... 29 3.5
Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical p... 29 4.6
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 29 4.6
Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical pr... 28 8.0
X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein. 28 8.0
U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death abno... 28 8.0
U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death abno... 28 8.0
AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical ... 28 8.0
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 8.0
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 105 bits (252), Expect = 3e-23
Identities = 46/85 (54%), Positives = 61/85 (71%)
Frame = +3
Query: 255 DKLKEVGATTELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDG 434
+KL+ +G EL D+G Q ++GK V+ +D K T+ +YGHLDVQPA KSDG
Sbjct: 51 EKLETIGTICELADLGTQELEGKTVKLPPVLLGTLGSDKNKKTLLVYGHLDVQPAAKSDG 110
Query: 435 WETEPFELVERNEKLYGRGSTDDKG 509
W+TEPFELVE++ KL+GRGS+DDKG
Sbjct: 111 WDTEPFELVEKDGKLFGRGSSDDKG 135
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +1
Query: 118 LPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQ 255
L +F+ +D + D+ K+LL+EAVAI SVS D R + IRMVHWM+
Sbjct: 5 LTNVFQQIDGDYDNLKELLREAVAIQSVSGDPSKRDETIRMVHWMK 50
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 631 LMDKLKPEGFFDSVDYVCISDNYWLGTTKPCITNGLR 741
L+++ K + F VD+VCISD+YWLGT KPC+T GLR
Sbjct: 176 LLEREK-DRFLAGVDFVCISDSYWLGTKKPCLTYGLR 211
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +2
Query: 509 PVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 622
PVL W H I A + G +LPVN+KF E MEESGS GL
Sbjct: 136 PVLCWFHAIRAAQKNGIDLPVNIKFCLEGMEESGSVGL 173
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 90.6 bits (215), Expect = 1e-18
Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 DKLKEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSD 431
D+LK +G T L ++G QT+ G+ + D K T+ IYGHLDVQPA K D
Sbjct: 50 DQLKTLGVETSLWELGQQTLPSGEQLPLPPAVFGVYGRDKSKKTLLIYGHLDVQPAEKED 109
Query: 432 GWETEPFELVERNEKLYGRGSTDDKG 509
GW T PFEL E + KL+GRGSTDDKG
Sbjct: 110 GWNTNPFELTEIDGKLFGRGSTDDKG 135
Score = 51.6 bits (118), Expect = 6e-07
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 509 PVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 622
PV+ W+ + + G +LP+N+KF+ ECMEES SEGL
Sbjct: 136 PVIAWIAVLKVLQTLGIDLPINIKFVLECMEESSSEGL 173
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 127 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHW 249
+FK +D+ +D + LL+E+VAI SVS D R DC+RM W
Sbjct: 7 VFKSIDERQDEFIDLLRESVAIQSVSADPARRGDCVRMSEW 47
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 670 VDYVCISDNYWLGTTKPCITNGLR 741
V + CISDNYWLG KPC+T GLR
Sbjct: 187 VTFSCISDNYWLGRNKPCLTYGLR 210
>Z92829-11|CAE17737.1| 257|Caenorhabditis elegans Hypothetical
protein F10A3.16 protein.
Length = 257
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 724 YMASWFPTNSYRIYIHSL-HYQRIPQVSICPLISC 623
Y W+ + YR Y H L ++Q IP++S C +I C
Sbjct: 132 YSVLWY--SDYRKYFHQLQNFQAIPRISFCSIIVC 164
>Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical
protein C10C5.4 protein.
Length = 397
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 363 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDKGL 512
+ P+ ++ +Y H DV P + + W +P+ + + ++ RG+ D K L
Sbjct: 63 SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDTKCL 112
>Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical
protein C10C5.5 protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 363 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 506
+ P+ ++ +Y H DV P + + W +P+ + + ++ RG+ D K
Sbjct: 63 SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDMK 110
>Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical
protein C10C5.3 protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 363 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 506
+ P+ ++ +Y H DV P + + W +P+ + + ++ RG+ D K
Sbjct: 63 SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDMK 110
>Z11795-1|CAA77838.1| 130|Caenorhabditis elegans pceh16-1 protein
protein.
Length = 130
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 694 YRIYIHSLHYQRIPQVSICPLISCQAFGTRFLHTFENELQIDRQLSTSALI 542
Y +Y Y+R + S+C QA+ R L E E Q D+ LS + I
Sbjct: 7 YNMYSRKHDYKR-SRKSVCERKPRQAYSARQLDRLETEFQTDKYLSVNKRI 56
>Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical
protein W02B12.7 protein.
Length = 471
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 55 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 207
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 11 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 61
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 55 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 207
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 145 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 195
>Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical
protein F01G10.2 protein.
Length = 437
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 381 TVCIYGHLDVQPALKSD-GWETEPFELVERNEKLYGRGSTDDKGLY 515
TV LDV LK + GW FE +K YGR + +KG Y
Sbjct: 265 TVADMNGLDVMEKLKKENGWPASDFEKEVWRQKRYGRKT--NKGYY 308
>Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 483 GRGSTDDKGLYLVGCIPSMPIRALVLSCLSI*SSFSNV 596
GR +D KG++ C PS P+R ++ ++F NV
Sbjct: 164 GRYCSDMKGMFAYTCAPSKPLRIDLVEFCKDYAAFCNV 201
>X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 595 TFENELQIDRQLSTSALIGIDGMQPTKYRPLS 500
TFE Q++ +L + L+G++ + P Y+ L+
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLA 375
>U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death
abnormality protein4, isoform b protein.
Length = 571
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 595 TFENELQIDRQLSTSALIGIDGMQPTKYRPLS 500
TFE Q++ +L + L+G++ + P Y+ L+
Sbjct: 366 TFEKMAQLNNKLESRGLVGVECITPYSYKSLA 397
>U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death
abnormality protein4, isoform a protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 595 TFENELQIDRQLSTSALIGIDGMQPTKYRPLS 500
TFE Q++ +L + L+G++ + P Y+ L+
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLA 375
>AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 483 GRGSTDDKGLYLVGCIPSMPIRALVLSCLSI*SSFSNV 596
GR +D KG++ C PS P+R ++ ++F NV
Sbjct: 164 GRYCSDMKGMFAYTCAPSKPLRIDLVEFCKDYAAFCNV 201
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 47 FLLIINIIQ*VPNKFLQKWQRKKH 118
FL+I+N+ + N+FL+ W KK+
Sbjct: 172 FLMILNLFALLTNQFLRTWNLKKY 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,253,804
Number of Sequences: 27780
Number of extensions: 396417
Number of successful extensions: 1008
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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