Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20041
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    27   0.25 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    25   0.99 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    25   0.99 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +1

Query: 139 VDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQTN 261
           VD+ K   ++L  +   +  + CD+  + D ++++ W++ N
Sbjct: 41  VDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKN 81


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 533 INAYKGTGAELPVNLKFIFECMEESGSEGLTAY*WTN*NL--RDSLIV*TMYVYPIT 697
           +  + G     P +  +I+  +    S GLT   WTN N+  R  L   T++ Y IT
Sbjct: 160 LEEWTGKNITTPWDYYYIYHTLVAEQSYGLTLPSWTN-NIFPRGELFDATVFTYNIT 215


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 533 INAYKGTGAELPVNLKFIFECMEESGSEGLTAY*WTN*NL--RDSLIV*TMYVYPIT 697
           +  + G     P +  +I+  +    S GLT   WTN N+  R  L   T++ Y IT
Sbjct: 175 LEEWTGKNITTPWDYYYIYHTLVAEQSYGLTLPSWTN-NIFPRGELFDATVFTYNIT 230


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 533 INAYKGTGAELPVNLKFIFECMEESGSEGLTAY*WTN*NL--RDSLIV*TMYVYPIT 697
           +  + G     P +  +I+  +    S GLT   WTN N+  +  L   T++ Y IT
Sbjct: 63  LEEWTGKNITTPWDYYYIYHTLVAEQSYGLTLPSWTN-NIFPKGELFDATVFTYNIT 118


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 45 FSCLSSTLFSEFQTSFCK 98
          F CL+ST+ SE   + CK
Sbjct: 15 FLCLASTILSESAGTSCK 32



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 703 TNSYRIYIHSLHYQRIPQVSICPLISCQAFGTRFLHTFENELQIDR--QLSTSALIGIDG 530
           T+ + +++H     RIP+ +  PL+  +      + TF +     R  +L+  + +G+  
Sbjct: 92  TSLHELHVHGCKVLRIPEGAFQPLLELKKL---TVQTFNSVWGASRFLELAPDSFLGLRE 148

Query: 529 MQPTKYRPLSSVEPLPYN 476
           +   +    S+V+ LP N
Sbjct: 149 LHTLEIVE-SNVQALPVN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,599
Number of Sequences: 438
Number of extensions: 4582
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)