Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20040
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 57 2e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 53 2e-07
12_02_0911 + 24236374-24237582 31 1.2
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.7
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 2.7
05_05_0221 - 23385626-23386702 28 6.2
07_03_0574 - 19629875-19631032 28 8.3
07_01_0942 + 7957776-7958004,7958113-7958708 28 8.3
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 282 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 461
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 462 RG---KLTGSVTDLITYRAPQ 515
RG +L VT L + P+
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPE 171
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 542 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 673
A+E AL LE V + + + S ND L D++ EFL+EQ
Sbjct: 178 AMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQ 220
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 315 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 485
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 486 TDLITYRAPQ 515
T L + P+
Sbjct: 194 TPLTEFDHPE 203
>12_02_0911 + 24236374-24237582
Length = 402
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 527 ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGNAT 691
++GA+A + A L+L+ S +EV +H+ D+LS +EQY G+++
Sbjct: 169 DAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSS 225
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 533 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 640
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = +3
Query: 342 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPQTR 521
A+ YF + TV P A FF + +RE T L+D LL S L YR + R
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL-------SDQHLKNYRMRKVR 165
Query: 522 RGRAAHQPSSTPSSWR 569
+ + P + WR
Sbjct: 166 EIQESRTPGGS-QKWR 180
>05_05_0221 - 23385626-23386702
Length = 358
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 227 SVTSAPSPSG*VAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPPRLREAILR 406
+ T+AP S + ++L+ E S V L HG L +G L ILR
Sbjct: 11 TATAAPVASPAASSMASELMAQGRE-----SAAVLEALLHGASLPPAHGGAHALAAEILR 65
Query: 407 CCD 415
CCD
Sbjct: 66 CCD 68
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 351 PPWLSTGLTRPLPPGXXXXXXXXXSAPW*ATHPDGDG-ADVTLCS 220
PP+ G+ RPLP + W T P DG A V CS
Sbjct: 164 PPYADDGIGRPLPGSRVTALAVVGAGIWTTTAPAEDGVASVRPCS 208
>07_01_0942 + 7957776-7958004,7958113-7958708
Length = 274
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 454 CS*GES*QAP*PTSSRTGPRKHVVGERRISPRA 552
C+ GE+ P S R GP+ HVVG R PRA
Sbjct: 108 CAGGEAQAQP---SGRAGPKSHVVG-RAFGPRA 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,696
Number of Sequences: 37544
Number of extensions: 388120
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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