Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20033
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    52   3e-07
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    52   3e-07
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    30   1.3  
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    30   1.3  
At1g31960.1 68414.m03929 hypothetical protein                          29   3.9  
At5g54720.1 68418.m06814 ankyrin repeat family protein contains ...    28   5.1  
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    28   6.8  

>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 133 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQ 255
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQ
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQ 57


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 133 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQ 255
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQ
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQ 57


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 138 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPII-QSI 269
           +++    T   Q KR+ ISC +  P S  L S+W  C+ +  QSI
Sbjct: 82  NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLDLAGQSI 126


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 138 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPII-QSI 269
           +++    T   Q KR+ ISC +  P S  L S+W  C+ +  QSI
Sbjct: 82  NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLDLAGQSI 126


>At1g31960.1 68414.m03929 hypothetical protein
          Length = 173

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 467 NPVSVKETSSHDCTVKGTNGRLRKHSL 387
           NP S++     D  VKG+NG +R HS+
Sbjct: 105 NPTSIRRKLFDDAGVKGSNGVVRFHSV 131


>At5g54720.1 68418.m06814 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 185

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 558 NYIEKETKIHRKFYNRYSTSLITLC 484
           +Y E  T +HR+ Y  Y+T +I LC
Sbjct: 67  DYEEYATILHREEYEEYATKIIDLC 91


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 141 HNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPI 257
           H+    T     KR+ I+C +  P S  L S+W  C+ +
Sbjct: 76  HDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDL 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,438
Number of Sequences: 28952
Number of extensions: 305870
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)