Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20031
(764 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62888 Cluster: 60S ribosomal protein L30; n=127; Eukar... 67 5e-10
UniRef50_Q8VZ19 Cluster: 60S ribosomal protein L30-2; n=34; Euka... 55 2e-06
UniRef50_P58374 Cluster: 60S ribosomal protein L30; n=20; Eukary... 54 3e-06
UniRef50_P14120 Cluster: 60S ribosomal protein L30; n=6; Eukaryo... 45 0.002
UniRef50_P49153 Cluster: 60S ribosomal protein L30; n=15; Eukary... 44 0.004
UniRef50_Q7XYC7 Cluster: Ribosomal protein L30; n=1; Triticum ae... 40 0.089
UniRef50_Q00T87 Cluster: Chromosome 17 contig 1, DNA sequence; n... 40 0.089
UniRef50_A0BYD7 Cluster: Chromosome undetermined scaffold_137, w... 39 0.16
UniRef50_Q9XG43 Cluster: 60S ribosomal protein L30; n=1; Guillar... 38 0.36
UniRef50_A2DH05 Cluster: 60S ribosomal protein L30, putative; n=... 38 0.36
UniRef50_Q6R7L3 Cluster: ORF10; n=1; Ostreid herpesvirus 1|Rep: ... 33 7.8
>UniRef50_P62888 Cluster: 60S ribosomal protein L30; n=127;
Eukaryota|Rep: 60S ribosomal protein L30 - Homo sapiens
(Human)
Length = 115
Score = 66.9 bits (156), Expect = 5e-10
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3
Query: 150 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKLFDKAK 275
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK+ + K
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGK 42
Score = 37.5 bits (83), Expect = 0.36
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 221 GKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
GK +L + + +RQGKAKLVI+A N P LR
Sbjct: 25 GKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>UniRef50_Q8VZ19 Cluster: 60S ribosomal protein L30-2; n=34;
Eukaryota|Rep: 60S ribosomal protein L30-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 112
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = +3
Query: 150 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLK 257
MV KK KK+ E INSRLALVMKSGKY LGYK LK
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLK 36
Score = 34.3 bits (75), Expect = 3.4
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 161 KETEKDHRVN*LPPCLGDEIGKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
K+T+K H L + GK L ++ ++LR K KL++I+ N PPLR
Sbjct: 5 KKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56
>UniRef50_P58374 Cluster: 60S ribosomal protein L30; n=20;
Eukaryota|Rep: 60S ribosomal protein L30 - Branchiostoma
belcheri (Amphioxus)
Length = 114
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 162 KKQKKTIESINSRLALVMKSGKYCLGYKQTLKLFDKAK 275
K+++KT+ESINSRL LVMKSGKY LG K+TLK+ + K
Sbjct: 2 KQKRKTMESINSRLQLVMKSGKYVLGLKETLKVLRQGK 39
Score = 40.3 bits (90), Expect = 0.051
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 221 GKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
GK +L ++ + LRQGKAKL+IIA N P LR
Sbjct: 22 GKYVLGLKETLKVLRQGKAKLIIIANNTPALR 53
>UniRef50_P14120 Cluster: 60S ribosomal protein L30; n=6;
Eukaryota|Rep: 60S ribosomal protein L30 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 105
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 174 KTIESINSRLALVMKSGKYCLGYKQTLKLFDKAK 275
K+ ESIN +LALV+KSGKY LGYK T+K + K
Sbjct: 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGK 38
Score = 37.1 bits (82), Expect = 0.48
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 221 GKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
GK L ++ ++LRQGK+KL+IIA N P LR
Sbjct: 21 GKYTLGYKSTVKSLRQGKSKLIIIAANTPVLR 52
>UniRef50_P49153 Cluster: 60S ribosomal protein L30; n=15;
Eukaryota|Rep: 60S ribosomal protein L30 - Trypanosoma
brucei brucei
Length = 105
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 159 AKKQKKTIESINSRLALVMKSGKYCLGYKQTLK 257
AKK K +++IN+++ LVMKSGKY LG +Q+LK
Sbjct: 2 AKKVKSKVDTINTKIQLVMKSGKYVLGTQQSLK 34
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +2
Query: 221 GKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
GK +L Q + +TLRQG++KLV+I+ N PP+R
Sbjct: 23 GKYVLGTQQSLKTLRQGRSKLVVISANCPPIR 54
>UniRef50_Q7XYC7 Cluster: Ribosomal protein L30; n=1; Triticum
aestivum|Rep: Ribosomal protein L30 - Triticum aestivum
(Wheat)
Length = 75
Score = 39.5 bits (88), Expect = 0.089
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 168 QKKTIESINSRLALVMKSGKYCLGYKQTLK 257
+++ +IN++L LVMKSGKY LGYK LK
Sbjct: 24 RRRARRNINNKLQLVMKSGKYTLGYKTVLK 53
>UniRef50_Q00T87 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 170
Score = 39.5 bits (88), Expect = 0.089
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 307 RSIFSDDNQLCFALSKSFKVCLYPKQYFPDFITKARRELIDSMVFF--CFFAATIL 146
R +F+ + L L K F V LYP Y PD +T REL+ S FF CF A L
Sbjct: 110 RVLFAINTNLLAPLRKVFSVDLYPSVYRPDRMTIVSRELMPSAAFFEPCFGAIFFL 165
>UniRef50_A0BYD7 Cluster: Chromosome undetermined scaffold_137,
whole genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_137,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 201
Score = 38.7 bits (86), Expect = 0.16
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 183 ESINSRLALVMKSGKYCLGYKQTLK 257
ES+N +L LV++SGK +GYKQTLK
Sbjct: 8 ESVNQKLQLVVRSGKITMGYKQTLK 32
>UniRef50_Q9XG43 Cluster: 60S ribosomal protein L30; n=1; Guillardia
theta|Rep: 60S ribosomal protein L30 - Guillardia theta
(Cryptomonas phi)
Length = 107
Score = 37.5 bits (83), Expect = 0.36
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 165 KQKKTIESINSRLALVMKSGKYCLGYKQTLK 257
K K T E ++S+L +++K+GK+ GYK TLK
Sbjct: 5 KNKSTSELLSSKLKIIIKTGKFSYGYKATLK 35
>UniRef50_A2DH05 Cluster: 60S ribosomal protein L30, putative; n=5;
Eukaryota|Rep: 60S ribosomal protein L30, putative -
Trichomonas vaginalis G3
Length = 112
Score = 37.5 bits (83), Expect = 0.36
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3
Query: 162 KKQKKTIESINSRLALVMKSGKYCLGYKQTLK 257
KK + ESI + L+LV KSGKY LG QTLK
Sbjct: 4 KKLSRARESIINSLSLVTKSGKYSLGISQTLK 35
>UniRef50_Q6R7L3 Cluster: ORF10; n=1; Ostreid herpesvirus 1|Rep:
ORF10 - Ostreid herpesvirus 1
Length = 342
Score = 33.1 bits (72), Expect = 7.8
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +3
Query: 21 LDFSKFHSVSIALTALNKSFYNTYRGY*IHCFILGFISIYASKMVAAKKQKKTIESINSR 200
LDF F I + + +N ++GY HC++ + I A + + +++E
Sbjct: 70 LDFLLFWKGKIEYSTVINELFNAHKGYFHHCYM---VDIIAKRYARKLYKPESLEENKEW 126
Query: 201 LALVMKSGKYCLGYKQTLKLFD 266
LAL K+G + + L+D
Sbjct: 127 LALATKAGFMADSFFRKNNLYD 148
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,668,183
Number of Sequences: 1657284
Number of extensions: 13584631
Number of successful extensions: 27341
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27339
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -