Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20030
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 258 4e-70
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 258 6e-70
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 258 6e-70
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 161 7e-41
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 154 1e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 90 3e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 40 4e-04
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 38 0.001
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.023
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.023
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.023
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 29 0.87
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.5
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.5
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 2.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 6.1
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 8.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 8.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 258 bits (633), Expect = 4e-70
Identities = 129/166 (77%), Positives = 139/166 (83%)
Frame = +1
Query: 10 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 189
IN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAER
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAER 67
Query: 190 ERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 369
ER + + IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGI
Sbjct: 68 ERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGI 127
Query: 370 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 507
SK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE
Sbjct: 128 SKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 98.3 bits (234), Expect = 1e-21
Identities = 39/65 (60%), Positives = 52/65 (80%)
Frame = +3
Query: 510 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 689
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDS 232
Query: 690 ILPPA 704
I PPA
Sbjct: 233 IEPPA 237
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 258 bits (632), Expect = 6e-70
Identities = 128/166 (77%), Positives = 139/166 (83%)
Frame = +1
Query: 10 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 189
IN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAER
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAER 67
Query: 190 ERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 369
ER + + IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGI
Sbjct: 68 ERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGI 127
Query: 370 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 507
SK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE
Sbjct: 128 SKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 98.3 bits (234), Expect = 1e-21
Identities = 39/65 (60%), Positives = 52/65 (80%)
Frame = +3
Query: 510 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 689
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDS 232
Query: 690 ILPPA 704
I PPA
Sbjct: 233 IEPPA 237
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 258 bits (632), Expect = 6e-70
Identities = 128/166 (77%), Positives = 139/166 (83%)
Frame = +1
Query: 10 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 189
IN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAER
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAER 67
Query: 190 ERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 369
ER + + IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGI
Sbjct: 68 ERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGI 127
Query: 370 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 507
SK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE
Sbjct: 128 SKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 98.3 bits (234), Expect = 1e-21
Identities = 39/65 (60%), Positives = 52/65 (80%)
Frame = +3
Query: 510 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 689
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDS 232
Query: 690 ILPPA 704
I PPA
Sbjct: 233 IEPPA 237
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 161 bits (392), Expect = 7e-41
Identities = 83/182 (45%), Positives = 114/182 (62%), Gaps = 4/182 (2%)
Frame = +1
Query: 1 RHEINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 180
+ +NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 181 AERER----RYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 348
ERE+ Y E R +L DAPGH+ ++ NMI G SQAD VL+++A
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLL----DAPGHKGYVTNMINGASQADIGVLVISARR 351
Query: 349 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEDPHTSRR 528
GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E + RR
Sbjct: 352 GEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRR 411
Query: 529 LA 534
+A
Sbjct: 412 VA 413
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 154 bits (373), Expect = 1e-38
Identities = 77/164 (46%), Positives = 103/164 (62%)
Frame = +1
Query: 10 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 189
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 190 ERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 369
R S + + + DAPGHRDFI MI G S AD AVL+V + FE G
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 370 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIK 501
+NGQTREHA L LG+ +++V VNK+D +SE RF+EIK
Sbjct: 298 LENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIK 339
Score = 31.9 bits (69), Expect = 0.094
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 519 IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVERKEGKADGKCLIEALDAI 692
IK +G+ + V FVPIS G N++ + S W+K G L+ ALD +
Sbjct: 347 IKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQL 394
Query: 693 LPP 701
+PP
Sbjct: 395 VPP 397
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 90.2 bits (214), Expect = 3e-19
Identities = 59/157 (37%), Positives = 80/157 (50%)
Frame = +1
Query: 10 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 189
+NI IGHVD GK+T T I KC ++G+ SF +DK E+
Sbjct: 54 VNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDKAPEEK 98
Query: 190 ERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 369
R +E H+D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 99 ARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP--- 155
Query: 370 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 480
QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 156 ----QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 39.9 bits (89), Expect = 4e-04
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 192
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 193 R--RYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 366
R ++ S RN ++ ID PGH DF + + D AV I+ + AG
Sbjct: 77 RGITINSAAISFTWRNQRINL--IDTPGHADFTFEVERSVAVLDGAVAII-----DGSAG 129
Query: 367 ISKNGQTREHALLAFTLGVKQLIVGVNKMD 456
+ QT+ A G+ ++I VNKMD
Sbjct: 130 V--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 435
+D PGH + M+ G + D A+L++A QT EH + +K +I
Sbjct: 113 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHII 166
Query: 436 VGVNKMDSTEPPYSEPRFEEIKK 504
+ NK+D +E ++ I K
Sbjct: 167 ILQNKVDLIRESAAEEHYQSILK 189
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 33.9 bits (74), Expect = 0.023
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 183
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 184 ERERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIV 336
E + L ID+PGH DF + D A+++V
Sbjct: 80 EMTDD-DMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.9 bits (74), Expect = 0.023
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 189
NI + H+DSGK+T T ++Y G I D + + +M + + A
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAAT 120
Query: 190 ERRYHNRYCSLEVRN*QVLCYH-------IDAPGHRDFIKNMITGTSQADCAVLIVAAGT 348
+ +E Q + ID PGH DF + D AVL++ A +
Sbjct: 121 HCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVS 180
Query: 349 GEFEAGISKNGQTREH 396
G I+ + Q R +
Sbjct: 181 GVQSQTITVDRQMRRY 196
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 33.9 bits (74), Expect = 0.023
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 183
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 184 ERERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIV 336
E + L ID+PGH DF + D A+++V
Sbjct: 80 EMTDD-DMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 28.7 bits (61), Expect = 0.87
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 446 TKWIPLNHHTVSPDLRKSRRKILI-HQEDWLQPSCCRFRAH 565
TK++ + H+ ++ L S+ ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIV 336
ID PGH F GTS + A+L++
Sbjct: 554 IDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 706 AAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 572
A GG S+ P+ LPS + P L E +ML CH
Sbjct: 546 AGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 351
+D PGH F G + AD VL+VA G
Sbjct: 225 LDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIV 336
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 175 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 47
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 493 EIKKE-DPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSR 624
E+K + DP+ + L + L L F DG + C P+ L +R
Sbjct: 693 ELKADFDPYVNEVLTSVVLPGLKFFFHDGVRSACCKCIPQLLNAR 737
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = +1
Query: 442 VNKMDSTEPPYSEPRFEEIKKEDPHTSRRLATT 540
+++ +++ +S+PRF+++K P++S R +
Sbjct: 503 LHRRKASDSNFSDPRFDDLKYLSPNSSPRFVAS 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,890
Number of Sequences: 5004
Number of extensions: 65976
Number of successful extensions: 241
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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