Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20029
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 141 1e-34
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 130 1e-31
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 62 8e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 6e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 1e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 45 1e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 43 4e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 42 7e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 6e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 39 8e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 37 0.002
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 35 0.013
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.018
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 32 0.094
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 31 0.22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 30 0.38
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.0
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 2.7
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 2.7
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 3.5
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 8.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 8.1
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 141 bits (341), Expect = 1e-34
Identities = 59/82 (71%), Positives = 74/82 (90%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+FY+A+E EEWKL+TLCDLY+T+++ QAVIFCNTRRKVDWLTE + RDFTVS+MHGDMD
Sbjct: 234 QFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMD 293
Query: 188 QREREVIMRQFRTGSSRVLITT 253
Q +R+ +M +FRTGSSR+LITT
Sbjct: 294 QAQRDTLMHEFRTGSSRILITT 315
Score = 84.2 bits (199), Expect = 2e-17
Identities = 42/76 (55%), Positives = 50/76 (65%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LLARGIDVQQVS VINYDLP+NRENY NFVT D R +++IE F
Sbjct: 317 LLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQF 376
Query: 436 YHTSIVEMPSDVANLI 483
Y+T I EMP ++A+LI
Sbjct: 377 YNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 130 bits (315), Expect = 1e-31
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+++IA+E EEWK +TLCDLYDTL+I QAVIFCN+RRKVDWLTE M +FTV++MHG+M
Sbjct: 236 QYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMP 295
Query: 188 QREREVIMRQFRTGSSRVLITTVYW 262
Q+ER+ IM+ FR G+SRVLI T W
Sbjct: 296 QKERDAIMQDFRQGNSRVLICTDIW 320
Score = 78.2 bits (184), Expect = 1e-15
Identities = 38/74 (51%), Positives = 46/74 (62%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARGIDVQQVS VINYDLP+NRENY NFVT D R L+DIE +Y
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYS 380
Query: 442 TSIVEMPSDVANLI 483
T I EMP ++ +++
Sbjct: 381 TVIDEMPMNIGDMV 394
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+ Y+ + EE K L +LY L+I Q++IFC + + + M TV+ + G+++
Sbjct: 328 QLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLE 387
Query: 188 QREREVIMRQFRTGSSRVLITT 253
+R+ IM FR G+S+VL+TT
Sbjct: 388 GAQRDAIMDSFRVGTSKVLVTT 409
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNR------ENYXXXXXXXXXXXXXXXXXNFVTEADR-RA 414
++ARGIDV QV+ V+NYD+P ++ + Y NFV +
Sbjct: 411 VIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEE 470
Query: 415 LKDIEDFYHTSIVEMPSD 468
+ I++++ I +P+D
Sbjct: 471 MNAIQEYFQRPITRVPTD 488
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.2 bits (112), Expect = 6e-07
Identities = 29/83 (34%), Positives = 40/83 (48%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LL RGID+Q V+ VIN+D P N E Y +F++ ADR L IE+
Sbjct: 340 LLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENE 399
Query: 436 YHTSIVEMPSDVANLI*GAYIFP 504
T I +P + + Y+FP
Sbjct: 400 LGTEIQPIPPSIDPSL---YVFP 419
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
T++Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + + ++ H M
Sbjct: 257 TQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKM 315
Query: 185 DQREREVIMRQFRTGSSRVLI 247
Q R + FR G R L+
Sbjct: 316 LQSHRNRVFHNFRNGVCRNLV 336
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSI-AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGD 181
T+ + +E E K L D+ TL +IF T+R D LT+ + +F +++HGD
Sbjct: 405 TQKVVHVEDSE-KRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGD 463
Query: 182 MDQREREVIMRQFRTGSSRVLITT 253
QRERE + FR+G + +++ T
Sbjct: 464 RTQRERERALELFRSGRTSIMVAT 487
Score = 32.7 bits (71), Expect = 0.054
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
+RG+D+ V+ VINYDLP++ ++Y
Sbjct: 491 SRGLDIPNVTHVINYDLPTDIDDY 514
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ +IF T+R D +T + + A+HGD Q ER+ ++ +FRTG S +++ T
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVAT 426
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
+RGIDV+ ++ V NYD P N E+Y
Sbjct: 430 SRGIDVKGITHVFNYDFPGNTEDY 453
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNF-VTEADRRALKDIED 432
+ RGID+++V+ VINYD+P + ++Y F +E D + L I++
Sbjct: 354 VFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQE 413
Query: 433 FYHTSIVEMPSDV 471
+ +I E+P ++
Sbjct: 414 RFEVNITELPDEI 426
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +2
Query: 14 YIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQR 193
Y+ +E E+ K + DL D+L Q VIF + + + L + +F +HG + Q
Sbjct: 274 YVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQE 332
Query: 194 EREVIMRQFRTGSSRVLITT 253
ER + F+ R+ + T
Sbjct: 333 ERIKRYKAFKDFDKRICVAT 352
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 44 LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 223
LE L +LY+ + ++F + + D L + R +T +++HG DQ +R+ + ++
Sbjct: 656 LELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Query: 224 TGSSRVLITT 253
G VLI T
Sbjct: 716 AGVFDVLIAT 725
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +1
Query: 229 LFSCLDHHCLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADR 408
+F L ++ARG+DV+ + V+NYD P++ E+Y F+T
Sbjct: 718 VFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQE 777
Query: 409 RALKDIEDFYHTSIVEMPSDVANL 480
+ DI S +P ++ L
Sbjct: 778 KYAVDIAKALKMSKQPVPKELQTL 801
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 6e-04
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = +1
Query: 259 LARGIDVQQVSCVINYDLPSNRENY 333
+ARG+D + V+CV+N+D+PSN ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 89 AVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
A+IF N R + + + L + V+ +H +M QRER + +FR ++++L+ T
Sbjct: 261 AIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVAT 315
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
+RG+D+ V VIN+DLP + ++Y + VTE D + IED
Sbjct: 319 SRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVG 378
Query: 442 TSIVE 456
T + E
Sbjct: 379 TKLSE 383
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/75 (32%), Positives = 32/75 (42%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LLARGID V VIN+D P + +Y F T+ D +K I
Sbjct: 347 LLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGV 406
Query: 436 YHTSIVEMPSDVANL 480
+S E+P+ V L
Sbjct: 407 MRSSGCEVPNWVMAL 421
Score = 32.3 bits (70), Expect = 0.071
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ VIF + L + + V +HG++ Q +RE + +FR G VLI T
Sbjct: 290 RVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIAT 345
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 247
+A+IFC T++ V+++ +H D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 248 TT 253
T
Sbjct: 1477 AT 1478
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 247
+A+IFC T++ V+++ +H D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 248 TT 253
T
Sbjct: 1477 AT 1478
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+IF N +R ++ + + ++ + +HG Q +RE + Q R ++ +L+ T
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVAT 573
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENY 333
+ RGID+ VS V+NY++ + E+Y
Sbjct: 575 IAGRGIDIPNVSLVLNYNMAKSIEDY 600
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 34.3 bits (75), Expect = 0.018
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 426
+RGID++ + VINY+ P+ E Y E DR+ LK +
Sbjct: 565 SRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGV 619
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ +IF ++ + L + +HG + Q +R + FR G L+ T
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLAT 561
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.094
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V VINYD+P++ + Y
Sbjct: 346 ARGLDIPLVDVVINYDIPTDSKAY 369
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 62 LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRV 241
L + L+ +IF T L + F+ +HG + Q R + +F++G+
Sbjct: 279 LVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 242 LITT 253
L+ T
Sbjct: 339 LVAT 342
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENY 333
L+ARGIDV VINYD P + +Y
Sbjct: 496 LMARGIDVANTQNVINYDPPLSVRSY 521
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/74 (20%), Positives = 31/74 (41%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+D+ V V+ YD P + ++Y F+ + + ++
Sbjct: 507 ARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVS 566
Query: 442 TSIVEMPSDVANLI 483
+I+E P+ + L+
Sbjct: 567 ANILEQPNGPSGLL 580
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
+RGID+ ++ VINYD P + + + V D L D++ F +
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLN 466
Query: 442 TSIVEMPSDV 471
+V V
Sbjct: 467 RPLVTSSKQV 476
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ ++F ++ V ++ E ++ D V +HG Q+ R +F +L+ T
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCT 393
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V ++ YD P + +Y
Sbjct: 397 ARGLDIPAVDWIVQYDPPDDPRDY 420
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARGID+ V+ VI+Y +P + Y
Sbjct: 450 ARGIDIPSVTHVIHYHVPHTADMY 473
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ +V VIN P E+Y
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDY 500
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 32 EEWKLETLCDLYDTLSIAQAVI--FCNTRRKVDW 127
+EWKL+ + D YD ++ QAV R + DW
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW 175
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 205 HFTLTLIHVSMHSRYSKVTQMHRFSEPIHLATGVAENYSLCNRQCIIQVTQSFQ 44
HF L ++ S S K +H F+ +T + + +C R+C+I + QS+Q
Sbjct: 256 HFLLRIVSFSGDSSL-KSFSLHFFALQF-FSTSLIQYTHIC-RKCVITILQSYQ 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,624
Number of Sequences: 5004
Number of extensions: 57767
Number of successful extensions: 161
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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