Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20027
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    30   0.43 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   1.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.3  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           27   4.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   4.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   5.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   5.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   7.0  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   9.2  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +2

Query: 506 RAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLA 685
           ++E+SK  KP+ TD            N  K+I++A    S  A  P+  TP AA AP  A
Sbjct: 43  KSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKATP-AAVAPVEA 91

Query: 686 DNPVD-EDKPADISPDAPKA 742
            + VD  +  A ++P+  KA
Sbjct: 92  TSAVDTSEAVASMTPNKRKA 111


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 578 IPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSA 757
           +   VK + L P V  +  +  E+K  E   A +LA      +K A     APK+ +K  
Sbjct: 9   VTQAVKALVLDP-VTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKE 67

Query: 758 DDL 766
           +DL
Sbjct: 68  EDL 70


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +2

Query: 521  KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 700
            K  KP AT    S D   ++P+ +K     P+  +   A  + K  +A+   K +    D
Sbjct: 1352 KTNKPVATTIFSSDDEDDLLPSSLK-----PSTITSTKASAKNKGKKASSVKKQSPEDDD 1406

Query: 701  EDKPADISPDAPKAEAKSAD 760
            +D     S   PKA + +A+
Sbjct: 1407 DDFIIPGSSSTPKASSTNAE 1426


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = -3

Query: 279 LEQVRLSSLSGSSYFGRFNRVINFGRDF*NWLSGNTSFSSATGIAKLTAAKAMHNSKTFI 100
           L Q     L  S YF     V  F +++   +     FS+ T I+K +AA  M + + FI
Sbjct: 66  LMQCNKKHLEASRYFQ--THVKEFMKEY---VDRENKFSNET-ISKSSAAALMTSMENFI 119

Query: 99  LNMDPVYATPL 67
           L  +PVY   L
Sbjct: 120 LFTNPVYHNKL 130


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +2

Query: 521 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 700
           KE+KP+               N  KK D+A         I ++ +P + DA   +D P+ 
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545

Query: 701 EDKPADISPDAP 736
           + K  + S   P
Sbjct: 546 KAKEPEESSITP 557


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 341 VFWGYIVLFGLWYSGYLVVTNW 276
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 471 QPEDSKTEVQATVLKFQKKKNLVLLMQKVLPTQL 572
           QP D + +++  VLK+  K N ++L      T L
Sbjct: 165 QPRDIEKQIREMVLKYISKNNAIILAVNAANTDL 198


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 596 KIDLAPTVESDAAAIPEI-KTPEAADAPKLADNPVDEDKPAD 718
           K  +   V SDA  + +  KT E AD     +  +DE KPAD
Sbjct: 290 KSKIRDIVNSDANVVEQSEKTTEDADEEPETEENLDEFKPAD 331


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
 Frame = +2

Query: 533  PSATDAEGSADSAAIIPNMVKKIDLAPTVESDA-AAIPEIKTPEAADAPKLADNPVDEDK 709
            PS   +      +++ P       L P+  S A    P    P+   A  L+  P D   
Sbjct: 1495 PSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSM 1554

Query: 710  PADISPDAPK 739
            P   SP AP+
Sbjct: 1555 PHRSSPYAPQ 1564


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 509 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 664
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 248 AAATSVGLTESSILGATSRIG*AGIRPFPPPLASPNSQPRRLCTIVRP 105
           A  T +  + +S  G  +    A   P PPP+    + P  L TI+ P
Sbjct: 138 APRTGISTSTNSFYGNNA----AATAPAPPPMMKKPAAPNSLSTIIYP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,385
Number of Sequences: 5004
Number of extensions: 46010
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)