Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20026
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 213 3e-56
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 212 4e-56
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 212 4e-56
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 119 4e-28
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 103 3e-23
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 65 1e-11
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 41 2e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 41 2e-04
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 40 4e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 35 0.010
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.014
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.024
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.30
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.52
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 28 1.2
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 2.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.8
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 213 bits (519), Expect = 3e-56
Identities = 103/133 (77%), Positives = 108/133 (81%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 471
+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 472 GEFEAGISKNGQT 510
GEFEAGISK+GQT
Sbjct: 121 GEFEAGISKDGQT 133
Score = 109 bits (263), Expect = 3e-25
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 689
REHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 690 SGWHGDNMLEPSTKM 734
SG+ GDNM+EP+T M
Sbjct: 192 SGFQGDNMIEPTTNM 206
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 212 bits (518), Expect = 4e-56
Identities = 102/133 (76%), Positives = 108/133 (81%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 471
+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 472 GEFEAGISKNGQT 510
GEFEAGISK+GQT
Sbjct: 121 GEFEAGISKDGQT 133
Score = 109 bits (263), Expect = 3e-25
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 689
REHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 690 SGWHGDNMLEPSTKM 734
SG+ GDNM+EP+T M
Sbjct: 192 SGFQGDNMIEPTTNM 206
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 212 bits (518), Expect = 4e-56
Identities = 102/133 (76%), Positives = 108/133 (81%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 471
+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 472 GEFEAGISKNGQT 510
GEFEAGISK+GQT
Sbjct: 121 GEFEAGISKDGQT 133
Score = 109 bits (263), Expect = 3e-25
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 689
REHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 690 SGWHGDNMLEPSTKM 734
SG+ GDNM+EP+T M
Sbjct: 192 SGFQGDNMIEPTTNM 206
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 119 bits (287), Expect = 4e-28
Identities = 57/129 (44%), Positives = 83/129 (64%)
Frame = +1
Query: 124 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*R 303
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E K+ + +
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 304 LSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 483
G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 484 AGISKNGQT 510
AG + GQT
Sbjct: 356 AGFERGGQT 364
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFV 683
REHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GYN V ++
Sbjct: 365 REHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYM 424
Query: 684 PISGWHGDNM 713
P+S + G N+
Sbjct: 425 PVSAYTGQNV 434
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 103 bits (247), Expect = 3e-23
Identities = 54/129 (41%), Positives = 74/129 (57%)
Frame = +1
Query: 124 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*R 303
K +++VV GHVDSGKST G ++++ G I+ R+++K EA K +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 304 LSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 483
+ G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 484 AGISKNGQT 510
G +NGQT
Sbjct: 295 RGFLENGQT 303
Score = 66.9 bits (156), Expect = 3e-12
Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 1/155 (0%)
Frame = +3
Query: 258 GKGSFKYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYHH*CSWTQRFHQEHDHRNLSG 437
GKGSF YAW+LD + ER R S + + + + F S
Sbjct: 220 GKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSA 279
Query: 438 *LRCAHRSCRYR*IRSWYL*ERSNREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 617
+L REHA L LG+ +++V VNK+D +SE RF+E
Sbjct: 280 DFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQE 337
Query: 618 IKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 719
IK VS + IK +G+ + V FVPIS G N+++
Sbjct: 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 64.9 bits (151), Expect = 1e-11
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = +1
Query: 118 KEKTHINIVVIGHVDSGKSTTTGHLIYKC----GGIDKRTIEKFEKEAQEWVKDPSNMLG 285
++K H+NI IGHVD GK+T T I KC G + +K +E +
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKCLSDLGQASFMDYSQIDKAPEEKAR------- 100
Query: 286 YWTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 465
GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A
Sbjct: 101 -----------GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSA 149
Query: 466 GTGE 477
G+
Sbjct: 150 TDGQ 153
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 641
REH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 158 REHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 41.1 bits (92), Expect = 2e-04
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI------DKRTIEKFEKEAQEWVKDPS 273
MGK N+ VI HVD GKST T L+ K G I D R ++ E + V S
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 274 NMLGYWTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 453
+ + + + + + V +ID+PGH DF + D A++
Sbjct: 73 TAISLFAE-----MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 454 IV 459
+V
Sbjct: 128 VV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 41.1 bits (92), Expect = 2e-04
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI------DKRTIEKFEKEAQEWVKDPS 273
MGK N+ VI HVD GKST T L+ K G I D R ++ E + V S
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 274 NMLGYWTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 453
+ + + + + + V +ID+PGH DF + D A++
Sbjct: 73 TAISLFAE-----MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 454 IV 459
+V
Sbjct: 128 VV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 39.9 bits (89), Expect = 4e-04
Identities = 33/113 (29%), Positives = 48/113 (42%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVS 315
N+ +I H+D+GK+T T ++Y GG F V ++ Y R
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYY-GGFTSH----FGN-----VDTGDTVMDYLPAERQR-- 77
Query: 316 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 78 -GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 35.1 bits (77), Expect = 0.010
Identities = 26/113 (23%), Positives = 47/113 (41%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVS 315
N VI H+D GKST + ++ G I++ + E + R ++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVER------------RRGIT 107
Query: 316 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
V ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 108 VKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.014
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVS 315
NI + H+DSGK+T T ++Y G I K+ E V+ N+ L
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHE-VRGKDNVGAKMDFMELERE 110
Query: 316 VGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 438
GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 439 DCAVLIVAAGTG 474
D AVL++ A +G
Sbjct: 170 DGAVLVLCAVSG 181
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 319 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 367 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 462
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 364 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 376 IIDAPGHRDFIKNMITGTSQADCAVLIV 459
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 229 EKFEKEAQEWVKDPSNMLGYWTN*RLSVSVGITIDIALWKFETS 360
EKF + W +P N L + N +S G + LW+ ETS
Sbjct: 251 EKFNPQILHWHANPLNGLSWALNGEYLLSGGQEGVLVLWQMETS 294
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 310 VSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 465
++VG D ++K + + + + PGH D I+++ S LI A
Sbjct: 186 IAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 274 LKDPLPIPGPPSRTSRWYVCQYHHIC 197
+ PL P PP +T + Y QY+ +C
Sbjct: 1 MSTPLIPPAPPKKTLQLYTPQYYGLC 26
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 313 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 459
S +T+ ++ K +T + ID PGH DF+ + + +D VL+V
Sbjct: 194 STPLTLAVSDMKGKTFAFQC--IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 322 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 414
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 595 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 684
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,998
Number of Sequences: 5004
Number of extensions: 62839
Number of successful extensions: 249
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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