Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20026
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 2e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 90 2e-18
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 84 1e-16
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 82 5e-16
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 38 0.008
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.019
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.033
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 35 0.060
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 35 0.079
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 30 1.7
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.2
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_13334| Best HMM Match : CRA_rpt (HMM E-Value=5.1) 29 5.2
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 6.8
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 28 9.0
SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3) 28 9.0
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.0
SB_15835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE 255
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSE 48
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/105 (39%), Positives = 65/105 (61%)
Frame = +1
Query: 196 YKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVSVGITIDIALWKFETSKYYVT 375
Y G +DKRT+EK+E+EA+E ++ + + G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 376 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 510
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQT
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQT 270
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 665
REHA+LA T GVK L++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 271 REHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 84.2 bits (199), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 319 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 435
GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERER 317
MGKGSFKYAWVLDKLKAERER
Sbjct: 1 MGKGSFKYAWVLDKLKAERER 21
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/61 (57%), Positives = 46/61 (75%)
Frame = +1
Query: 328 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 507
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 508 T 510
T
Sbjct: 61 T 61
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMD 578
REHA+L +LGV QLIV +NK+D
Sbjct: 62 REHAILVRSLGVTQLIVAINKLD 84
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/110 (22%), Positives = 46/110 (41%)
Frame = +1
Query: 145 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVSVGI 324
+I H D+GK+T T L+ G I + K K + D + GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKGATSDFM---------EIERQRGI 65
Query: 325 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 37.5 bits (83), Expect = 0.011
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +1
Query: 127 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKF----EKEAQEWVKDPSNMLGY 288
T I + V+G+V+SGKST G L Y G + + F E ++ +LG+
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 289 -WTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIV 459
T ++ S G + + E S +T ID GH ++K I G + D A+L++
Sbjct: 171 SCTGEVVNYSDGRSAEDVC---EQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVI 227
Query: 460 AAGTG 474
A G
Sbjct: 228 AGNAG 232
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 36.7 bits (81), Expect = 0.019
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
M K+ N+ VI HVD GKST T L+ K G I + E + KD +
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII--AAAKAGETRFTDTRKDEQDRC--I 67
Query: 292 TN*RLSVSVGITIDIALWKFETSK-------YYVTIIDAPGHRDFIKNMITGTSQADCAV 450
T ++S+ + + +++ T + + +ID+PGH DF + D A+
Sbjct: 68 TIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGAL 127
Query: 451 LIVAAGTG 474
++V +G
Sbjct: 128 VVVDCVSG 135
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.7 bits (71), Expect(2) = 0.033
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 313 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 465
S GIT I + + + +D PGH F G D +++VAA
Sbjct: 121 SGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
Score = 22.2 bits (45), Expect(2) = 0.033
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 139 IVVIGHVDSGKSTTTGHL 192
+ V+GHVD GK++ ++
Sbjct: 94 VTVMGHVDHGKTSLLDYI 111
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 35.1 bits (77), Expect = 0.060
Identities = 36/133 (27%), Positives = 57/133 (42%)
Frame = +1
Query: 109 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGY 288
K+ + + NI V+GHVDSGK++ L + F+K Q + + LG+
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGITLDLGF 81
Query: 289 WTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 468
S V + + E +T++D PGH IK +I G A +I G
Sbjct: 82 -----SSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 469 TGEFEAGISKNGQ 507
T E G ++G+
Sbjct: 131 T--IEGGFGQSGK 141
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.7 bits (76), Expect = 0.079
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Frame = +1
Query: 133 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEAQEWVKDPSNMLGYWT 294
+ + V+G+VD+GKST T G L G +R K E E+ +++LG+
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 295 N*RL---SVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 426
++ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 370 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 81 FHFFTSQNNFFDTHHGLQTACNIRLV 4
F+FF+ NN F T HG+ TA ++LV
Sbjct: 29 FYFFSLINNNFTTKHGIATAVLLQLV 54
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 376 IIDAPGHRDFIKNMITGTSQADCAVLIV 459
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 172 STTTGHLIYKCGGIDK----RTIEKFEKEAQEWVKDPSNML 282
+T G LIY GG D ++E ++ +A+ W K+ NML
Sbjct: 292 ATVHGGLIYVLGGRDNDADLSSVEVYDPKAKTWSKEELNML 332
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 234
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_13334| Best HMM Match : CRA_rpt (HMM E-Value=5.1)
Length = 398
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 154 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQEWVKDPSNMLGYWTN*RLSVSVGIT 327
HV +S TT + I K T+ K KE++ W+ +PSN GYW +L+ +V I
Sbjct: 88 HVAEDRSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPSN--GYWPQ-QLNFAVWIL 139
Query: 328 IDI 336
++
Sbjct: 140 YEL 142
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 379 IDAPGHRDFIKNMITGTSQADCAVLIVA 462
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 579 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 719
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 286 TQAYLKDPLPIPGPPSRTSRWYVCQYHHIC 197
T Y P +PG S +W +C+Y+ C
Sbjct: 1229 TSLYCSCPTCLPGSGSLEMKWSICKYNGSC 1258
>SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3)
Length = 306
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQEWVKDPSNMLGYW 291
HV KS TT + I K T+ K KE++ W+ DPS GYW
Sbjct: 118 HVAEDKSFTT-----RVRDIFKETVVTHKSAKESRRWLSDPS--YGYW 158
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 273 KYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYH 377
+Y WV +K+ ER R Y YC + + L H
Sbjct: 2381 EYVWVHNKMVHERSRPYRCEYCGWHLASKSNLTLH 2415
>SB_15835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 359 LVSNFQRAISIVIPTLTLSL*FVQYPSIFE-GSFTHSWASFSNFSMVRLSIPPHL*IK 189
L +N Q +++ TLT + P++ GS+T+SW S S F ++ LS HL +K
Sbjct: 188 LENNSQEMAEVILSTLTGADITSLKPTLQAFGSYTNSWMSQSEF-VLHLSPENHLLLK 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,029,218
Number of Sequences: 59808
Number of extensions: 467529
Number of successful extensions: 1450
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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