Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20026
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 225 3e-59
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 225 3e-59
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 225 3e-59
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 193 9e-50
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 127 9e-30
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 127 9e-30
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 127 9e-30
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 103 1e-22
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 68 6e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 68 6e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 68 6e-12
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 62 5e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 62 5e-10
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 43 3e-04
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 41 8e-04
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 40 0.002
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 38 0.006
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.007
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 32 0.48
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 31 0.64
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.1
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.1
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 1.1
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 1.5
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 2.0
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.6
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.6
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.6
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.6
U64846-8|AAG24109.1| 331|Caenorhabditis elegans Serpentine rece... 29 4.5
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.9
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 7.9
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 225 bits (549), Expect = 3e-59
Identities = 108/133 (81%), Positives = 112/133 (84%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 471
+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 472 GEFEAGISKNGQT 510
GEFEAGISKNGQT
Sbjct: 121 GEFEAGISKNGQT 133
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYHH*CSWTQRFHQEHDHRNLS 434
MGKGSFKYAWVLDKL + R + + + Y+ H++ ++
Sbjct: 49 MGKGSFKYAWVLDKL---KAERERGITIDIALWKFETAKYYI-TIIDAPGHRDFIKNMIT 104
Query: 435 G*LR--CAHR--SCRYR*IRSWYL*ERSNREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 602
G + CA +C + REHALLA TLGVKQL V+ T P S
Sbjct: 105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSS 161
Query: 603 PRFEEIKK 626
R + I++
Sbjct: 162 RRSDTIQR 169
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 225 bits (549), Expect = 3e-59
Identities = 108/133 (81%), Positives = 112/133 (84%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 471
+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 472 GEFEAGISKNGQT 510
GEFEAGISKNGQT
Sbjct: 121 GEFEAGISKNGQT 133
Score = 128 bits (309), Expect = 4e-30
Identities = 80/164 (48%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYHH*CSWTQRFHQEHDHRNLS 434
MGKGSFKYAWVLDKL + R + + + Y+ H++ ++
Sbjct: 49 MGKGSFKYAWVLDKL---KAERERGITIDIALWKFETAKYYI-TIIDAPGHRDFIKNMIT 104
Query: 435 G*LR--CAHR--SCRYR*IRSWYL*ERSNREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 602
G + CA +C + REHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSE 164
Query: 603 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 734
RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 165 ARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 208
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 225 bits (549), Expect = 3e-59
Identities = 108/133 (81%), Positives = 112/133 (84%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 471
+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 472 GEFEAGISKNGQT 510
GEFEAGISKNGQT
Sbjct: 121 GEFEAGISKNGQT 133
Score = 128 bits (309), Expect = 4e-30
Identities = 80/164 (48%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYHH*CSWTQRFHQEHDHRNLS 434
MGKGSFKYAWVLDKL + R + + + Y+ H++ ++
Sbjct: 49 MGKGSFKYAWVLDKL---KAERERGITIDIALWKFETAKYYI-TIIDAPGHRDFIKNMIT 104
Query: 435 G*LR--CAHR--SCRYR*IRSWYL*ERSNREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 602
G + CA +C + REHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSE 164
Query: 603 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 734
RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 165 ARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 208
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 193 bits (471), Expect = 9e-50
Identities = 93/117 (79%), Positives = 97/117 (82%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYW 291
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 292 TN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 462
+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 95.9 bits (228), Expect = 3e-20
Identities = 44/61 (72%), Positives = 50/61 (81%)
Frame = +3
Query: 552 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 731
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 732 M 734
M
Sbjct: 174 M 174
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 127 bits (306), Expect = 9e-30
Identities = 60/132 (45%), Positives = 85/132 (64%)
Frame = +1
Query: 115 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWT 294
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E ++ +
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 295 N*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 475 EFEAGISKNGQT 510
EFE G + GQT
Sbjct: 224 EFETGFDRGGQT 235
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVP 686
REH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K+G+NP + +VP
Sbjct: 236 REHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVP 295
Query: 687 ISGWHG 704
SG G
Sbjct: 296 CSGLTG 301
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 127 bits (306), Expect = 9e-30
Identities = 63/130 (48%), Positives = 81/130 (62%)
Frame = +1
Query: 121 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN* 300
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA K
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 301 RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 480
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 481 EAGISKNGQT 510
E G GQT
Sbjct: 287 ETGFENGGQT 296
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVP 686
+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP
Sbjct: 297 KEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVP 352
Query: 687 ISGWHGDNMLE 719
+SG+ G+N+++
Sbjct: 353 VSGFTGENLIK 363
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 127 bits (306), Expect = 9e-30
Identities = 63/130 (48%), Positives = 81/130 (62%)
Frame = +1
Query: 121 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN* 300
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA K
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 301 RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 480
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 481 EAGISKNGQT 510
E G GQT
Sbjct: 305 ETGFENGGQT 314
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVP 686
+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP
Sbjct: 315 KEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVP 370
Query: 687 ISGWHGDNMLE 719
+SG+ G+N+++
Sbjct: 371 VSGFTGENLIK 381
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 103 bits (248), Expect = 1e-22
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVK 264
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAER 311
MGKGSFKYAWVLDKLK +
Sbjct: 49 MGKGSFKYAWVLDKLKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.1 bits (159), Expect = 6e-12
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = +1
Query: 118 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGY 288
++K H+N+ IGHVD GK+T T ++ G R E + +E +
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKAR-------- 96
Query: 289 WTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 468
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 97 ----------GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 469 TG 474
G
Sbjct: 147 DG 148
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.1 bits (159), Expect = 6e-12
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = +1
Query: 118 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGY 288
++K H+N+ IGHVD GK+T T ++ G R E + +E +
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKAR-------- 97
Query: 289 WTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 468
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 98 ----------GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 469 TG 474
G
Sbjct: 148 DG 149
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.1 bits (159), Expect = 6e-12
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = +1
Query: 118 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGY 288
++K H+N+ IGHVD GK+T T ++ G R E + +E +
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKAR-------- 97
Query: 289 WTN*RLSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 468
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 98 ----------GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 469 TG 474
G
Sbjct: 148 DG 149
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 61.7 bits (143), Expect = 5e-10
Identities = 44/120 (36%), Positives = 61/120 (50%)
Frame = +1
Query: 124 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*R 303
K ++N+ IGH+D GK+T T + T + +K + +K G R
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAI----------TRVQAKKGFAKHIKFDEIDKGKEEKKR 92
Query: 304 LSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 483
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 -----GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME 147
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 683
+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 150 KEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 61.7 bits (143), Expect = 5e-10
Identities = 44/120 (36%), Positives = 61/120 (50%)
Frame = +1
Query: 124 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*R 303
K ++N+ IGH+D GK+T T + T + +K + +K G R
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAI----------TRVQAKKGFAKHIKFDEIDKGKEEKKR 92
Query: 304 LSVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 483
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 93 -----GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME 147
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 510 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 683
+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 150 KEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 42.7 bits (96), Expect = 3e-04
Identities = 35/113 (30%), Positives = 49/113 (43%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVS 315
NI + H+DSGK+T T ++Y G ID E ++ V + + L
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----SMHEVRGKDDVGATMDFMD------LERQ 95
Query: 316 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
GITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 41.1 bits (92), Expect = 8e-04
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQEWVKDPSNMLGYWTN*RL 306
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERER----------------- 86
Query: 307 SVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
GIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 87 ----GITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 39.9 bits (89), Expect = 0.002
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE---WVKD 267
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +K
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 268 PSNMLGYWTN*R-LSVSVG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 432
+ L + + L G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 433 QADCAVLIVAAGTG 474
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE---WVKD 267
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +K
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 268 PSNMLGYWTN*R-LSVSVG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 432
+ L + + L G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 433 QADCAVLIVAAGTG 474
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 38.3 bits (85), Expect = 0.006
Identities = 32/113 (28%), Positives = 48/113 (42%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVS 315
NI VI HVD+GK+T T L+Y G I V D N + + + +
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI----------HVAGHV-DKGNTVTDFLD--IERE 73
Query: 316 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
GIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 319 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
GIT I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/114 (23%), Positives = 51/114 (44%)
Frame = +1
Query: 133 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSV 312
+N+ ++GHVDSGK+T T + + + F+ A D R ++
Sbjct: 14 LNLGILGHVDSGKTTLTRRI------AELGSTSAFDAHATSTTTDGIR--------RNTL 59
Query: 313 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
+G + +L S + +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 60 DLGFSTMTSL-----SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN 297
+I+ GH+D S GH +K GI E FE E ++ + P+ GY T+
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATS 1685
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 328 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 328 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 474
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Frame = +1
Query: 106 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRT---IEKFEKEAQEWVKD 267
P K+ + V+G+VD+GKST G L + G RT K E E+
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 268 PSNMLGYWTN*RLSVSV---GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS-- 432
+++LG+ + + +D + +K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTIFGMTGH 250
Query: 433 QADCAVLIVAAGTG 474
D +L++ A G
Sbjct: 251 MPDYTMLMIGANMG 264
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 367 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 462
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/108 (24%), Positives = 49/108 (45%)
Frame = +1
Query: 133 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSV 312
+N+ ++GHVDSGK+T T + + + F+ A D R ++
Sbjct: 14 LNLGILGHVDSGKTTLTRRI------AELGSTSAFDAHATSTTTDGIR--------RNTL 59
Query: 313 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 456
+G + +L S + +ID PGH I+ ++ ++ D A++I
Sbjct: 60 DLGFSTMTSL-----SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 376 IIDAPGHRDFIKNMITGTSQADCAVLIV 459
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 634 PHTSRRLATTQLLSLSCPFLD 696
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 634 PHTSRRLATTQLLSLSCPFLD 696
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 634 PHTSRRLATTQLLSLSCPFLD 696
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 634 PHTSRRLATTQLLSLSCPFLD 696
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>U64846-8|AAG24109.1| 331|Caenorhabditis elegans Serpentine
receptor, class t protein19 protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 414 VLDEISVSRSINDGNIVLASFELPESNIDCDTDAHAQPLVCPIP 283
VLD+I ++ N+VL FEL + C + H +P P P
Sbjct: 2 VLDKIIPDFNLTLTNMVLNGFELDPNYYGCPEEVHKRPPSVPRP 45
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 370 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 465
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 106 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 198
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,509
Number of Sequences: 27780
Number of extensions: 357344
Number of successful extensions: 1213
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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