Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20025
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0186 - 13912973-13913015,13913467-13913773,13913983-139140...    30   2.0  
07_03_0595 + 19845631-19845972                                         29   3.5  
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310...    29   3.5  
01_07_0109 - 41131714-41132988                                         28   8.1  

>10_07_0186 -
           13912973-13913015,13913467-13913773,13913983-13914043,
           13914124-13914299,13914393-13914450,13914709-13914776,
           13915591-13915666,13916523-13916627,13916711-13916768,
           13916874-13917031
          Length = 369

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 299 CPAWKLRGRTRRNPPYSLGQDLPHGVHRENCD 204
           CP W   G   +NP Y +G +   G  R++C+
Sbjct: 321 CPQWAAVGECAKNPNYMVGTNEAPGFCRKSCN 352


>07_03_0595 + 19845631-19845972
          Length = 113

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 137 GWAGVHDVLILLCVELLHRLVRHLDEGNIGGGSHGACLQH---KVSSC 3
           G   V +V I +  + L  L+R L+EG+ GGG  GA +       SSC
Sbjct: 48  GGEKVTEVKIRITRKQLEELLRRLEEGSDGGGGGGAVVSELLCMTSSC 95


>03_06_0135 +
           31928838-31929698,31929783-31929932,31930795-31931065,
           31931157-31931249,31931442-31931616,31931715-31931960,
           31932100-31932294,31932604-31932802
          Length = 729

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 280 ADALGGTLLIHWARTSPTASTAKIATEKTA 191
           A ALG +  I W   SPT+S+ +I+TE+++
Sbjct: 36  AIALGLSFAIVWTSLSPTSSSQQISTERSS 65


>01_07_0109 - 41131714-41132988
          Length = 424

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 328 FGAEPDFVLPAPPGNCADALGGTLLIHWARTSP--TASTAKIATEKTALRWYNASFLTLI 155
           FG  P F+LP    + A  L G   +H  +  P    S  KIA  +  ++ Y    L ++
Sbjct: 214 FGGGPLFLLPPGRPDVAATLAGETPLHRNKDLPGYFISATKIAVNQEQVQLYTQEPL-VV 272

Query: 154 SLCT 143
            LCT
Sbjct: 273 ELCT 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,014,357
Number of Sequences: 37544
Number of extensions: 389118
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)