Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20024
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 33 0.21
03_06_0088 - 31562596-31563096 30 1.1
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 30 1.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.5
01_01_0082 + 625198-625719 30 1.5
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 29 3.4
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 28 4.4
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 28 4.4
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 5.9
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 28 5.9
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 28 5.9
09_06_0081 + 20745627-20748144,20748211-20748308 27 7.7
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 27 7.7
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 7.7
02_04_0166 - 20508656-20509092,20509282-20509372 27 7.7
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 360 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 482
P PT P + P A Y YPY P+Q W P+TP
Sbjct: 75 PPPTTP-AYSLPPPAQPYGQYPYPYPSQGQAGAAYWPPSTP 114
>03_06_0088 - 31562596-31563096
Length = 166
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 278 RHRIIW-WYLGWPGGGAFAGL 219
R R W W+ GWP GGA AG+
Sbjct: 120 RRRCRWAWHEGWPAGGASAGV 140
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 291 QHSFQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 437
+H + P S PAA S P + P + G + HG G Q PY P
Sbjct: 157 RHDYPPPPSPAAVPAASS-PSVLPPSASFPGGGSSHGGGGMQMVPYGPP 204
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTP 482
PG P P P+P++ TP G GY P T P+ S DT+ PTTP
Sbjct: 143 PGGGCSSSPTPCDAP---PSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTS----PTTP 195
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 482
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 169 PGGGGGYSPTPSDTP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 221
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 482
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 195 PGGGGGYTPTPSDAP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 247
>01_01_0082 + 625198-625719
Length = 173
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +3
Query: 306 PGYSLGQQPAAMSYPG-ITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 482
P Y P ++YP TP+ P P+G GY P PT Y+ T T P
Sbjct: 70 PVYYPPPSPPPVAYPPPTTPSTNCPP---PPYGGGGYNPTPSYNPTPGYNPTPSGWFTPP 126
Query: 483 QNASILS 503
S L+
Sbjct: 127 NMPSYLT 133
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -1
Query: 458 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 279
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 30 CSICLEAFCDNDPSTVTSCKHEYHLQCILEWCQRSSQCPMCWQPISMKDPMSQELLEAVE 89
Query: 278 RHRII 264
+ R I
Sbjct: 90 QERNI 94
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 333 AAMSYPGITPAPTAPRGHVTPHGA 404
+A S P TP P AP H+ PHG+
Sbjct: 41 SAPSPPHRTPEPVAPVWHLRPHGS 64
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 235 PPPGQPKYHQIILCLVIMFN 294
PPPG P HQ++LC+ I F+
Sbjct: 71 PPPGPPP-HQLLLCIGIAFH 89
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAGCCPRLYPGW 302
P A PR A + G D+ C RL+PGW
Sbjct: 101 PTAAAAALLPRLRRAAAPLRGTDLWVPCWARLHPGW 136
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +3
Query: 309 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYD 452
GY G A Y G+ P P AP H G + PY Q Y+
Sbjct: 252 GYGGGAFQAPAGYYGVAPPPAAPYDH---QGWYYGNRQPYYHQQQCYE 296
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 455 CIIAL--GWCHIRIALITKCTMWCHMAARCSWCWRDS 351
C+ AL G CHIR + +W WCW +S
Sbjct: 401 CLHALWFGNCHIRAIAV----LWIDFVREIRWCWEES 433
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 330 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 482
P + P TP P APRG P G S+ Y + SY + PT P
Sbjct: 644 PHLRAPPVATPPPAAPRGWTMP-TTIGRYSFSYGGVSLSY--AMPCAPTAP 691
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 140 GKFTTKISKHSKYLFDHG 87
G FT +SKH+ +LF HG
Sbjct: 367 GNFTIFLSKHNTFLFGHG 384
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +3
Query: 297 SFQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 437
S P +LG A G +APR VTP GA G S P VTP
Sbjct: 799 SIAPSLALGNSKCA----GAEGLNSAPR--VTPPGAEGLNSAPRVTP 839
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 321 GQQPAAMSYPGITPAPTAPRGHVT 392
G AA+S+P P APRG VT
Sbjct: 74 GYDAAALSFPEEASRPRAPRGRVT 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,004
Number of Sequences: 37544
Number of extensions: 345240
Number of successful extensions: 1105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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