Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20024
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83236-1|CAB05777.1| 445|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 5.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 5.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 5.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 5.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 5.3
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 27 7.0
L10990-4|ABB88238.1| 438|Caenorhabditis elegans Hypothetical pr... 27 9.2
L10990-3|ABB88237.1| 505|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z83236-1|CAB05777.1| 445|Caenorhabditis elegans Hypothetical
protein K10H10.1 protein.
Length = 445
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 357 TPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPT 476
+P P+ P G + H AF + T SY W+P+
Sbjct: 241 SPCPSVPWGTLFRHPAFWAAAVAQYTGGNSYSILFNWLPS 280
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 360 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILS 503
P PT P + P + +S P +PT T P TPQN ++ S
Sbjct: 621 PPPTRPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRP-TPQNKAVTS 667
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 309 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGY 413
GY G A +YPG P AP + P G G+
Sbjct: 199 GYPGGPSSAPSAYPGAPQVPQAPNSFIPP-GTGGF 232
>L10990-4|ABB88238.1| 438|Caenorhabditis elegans Hypothetical
protein C30A5.10b protein.
Length = 438
Score = 27.1 bits (57), Expect = 9.2
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = +2
Query: 161 IHTETQIIPHPKDQFTHRSTILQMLHLLASLSTTKLSCAWL*CSTFIPTRV*SRTTTCSN 340
I+ T I +P + F M ++ +S ++T ++ STF T S TT+ +
Sbjct: 48 INPYTDIFVNPPNSFVD----FPMANIASSAASTISFQSYQNPSTFPSTTTASTTTSTTT 103
Query: 341 VLPRNHASTNCTSRPCDTTWCIWLSKLSLCDTNPE 445
+ P +T + +T W S + L NP+
Sbjct: 104 MPPTYQTTTKSVKKNTETLWTTSKSPMKL-SKNPK 137
>L10990-3|ABB88237.1| 505|Caenorhabditis elegans Hypothetical
protein C30A5.10a protein.
Length = 505
Score = 27.1 bits (57), Expect = 9.2
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = +2
Query: 161 IHTETQIIPHPKDQFTHRSTILQMLHLLASLSTTKLSCAWL*CSTFIPTRV*SRTTTCSN 340
I+ T I +P + F M ++ +S ++T ++ STF T S TT+ +
Sbjct: 48 INPYTDIFVNPPNSFVD----FPMANIASSAASTISFQSYQNPSTFPSTTTASTTTSTTT 103
Query: 341 VLPRNHASTNCTSRPCDTTWCIWLSKLSLCDTNPE 445
+ P +T + +T W S + L NP+
Sbjct: 104 MPPTYQTTTKSVKKNTETLWTTSKSPMKL-SKNPK 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,484
Number of Sequences: 27780
Number of extensions: 293302
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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