Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20024
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 32 0.23
At4g19420.1 68417.m02857 pectinacetylesterase family protein con... 31 0.70
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At1g24320.1 68414.m03068 alpha-glucosidase, putative similar to ... 28 3.7
At1g30780.1 68414.m03763 F-box family protein 28 4.9
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 27 6.5
At1g73390.3 68414.m08497 expressed protein 27 6.5
At1g73390.2 68414.m08496 expressed protein 27 6.5
At1g73390.1 68414.m08495 expressed protein 27 6.5
At1g17940.1 68414.m02220 expressed protein 27 6.5
At5g13140.1 68418.m01505 expressed protein 27 8.6
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 8.6
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 300 FQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSY 449
+ P Y GQQ A +Y G TAP+ A Y +YP T PTQSY
Sbjct: 689 WNPAY--GQQAAYGAYGGYPAGYTAPQAPTPVPQAAAYGAYPAQTYPTQSY 737
>At4g19420.1 68417.m02857 pectinacetylesterase family protein
contains Pfam profile: PF03283 pectinacetylesterase
Length = 397
Score = 30.7 bits (66), Expect = 0.70
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 488 ILRSCRNPFNCCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDS 351
+++ R F +I LG R I C C + SW W+DS
Sbjct: 304 VMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDS 349
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = -1
Query: 458 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 279
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 33 CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVE 92
Query: 278 RHR 270
+ R
Sbjct: 93 QER 95
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = -1
Query: 458 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 279
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 33 CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVE 92
Query: 278 RHR 270
+ R
Sbjct: 93 QER 95
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = -1
Query: 458 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 279
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 33 CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVE 92
Query: 278 RHR 270
+ R
Sbjct: 93 QER 95
>At1g24320.1 68414.m03068 alpha-glucosidase, putative similar to
alpha-glucosidase I from GI:16506680 [Arabidopsis
thaliana]
Length = 789
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 351 LGKTLLQVVVRDYTRVGMNVEHYNQAQDNLVVLRLARRWS 232
L L++ VVR+Y + G+ EHY+Q + R+ WS
Sbjct: 736 LRSNLIRNVVRNYDQTGIIWEHYDQTKGTGEGARVFTGWS 775
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 360 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 482
P P P P F QS PY +D + W+P+TP
Sbjct: 105 PVPVWPSLPEYPPFPFVDQSAPYQGFAPRFDESANWMPSTP 145
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 294 HSFQPGYSLGQQPAAMSYPGITPAPTAPRGHVTP 395
+S P +SL P++ SYP T +P+ H TP
Sbjct: 343 YSSSPSFSLN--PSSSSYPTSTSSPSFLHSHYTP 374
>At1g73390.3 68414.m08497 expressed protein
Length = 419
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 393 VSHGREVQLVLA*FLGKTLLQVVVRDYTRVGMNVEHYNQAQDNLVVLRLARRW 235
+ G ++QL +A K L V R + V+++ QAQDNL+ L LA W
Sbjct: 225 LGQGVDIQLGMAIDSAKATLAVKRRLSCEM---VKYWQQAQDNLMNLPLANGW 274
>At1g73390.2 68414.m08496 expressed protein
Length = 419
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 393 VSHGREVQLVLA*FLGKTLLQVVVRDYTRVGMNVEHYNQAQDNLVVLRLARRW 235
+ G ++QL +A K L V R + V+++ QAQDNL+ L LA W
Sbjct: 225 LGQGVDIQLGMAIDSAKATLAVKRRLSCEM---VKYWQQAQDNLMNLPLANGW 274
>At1g73390.1 68414.m08495 expressed protein
Length = 419
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 393 VSHGREVQLVLA*FLGKTLLQVVVRDYTRVGMNVEHYNQAQDNLVVLRLARRW 235
+ G ++QL +A K L V R + V+++ QAQDNL+ L LA W
Sbjct: 225 LGQGVDIQLGMAIDSAKATLAVKRRLSCEM---VKYWQQAQDNLMNLPLANGW 274
>At1g17940.1 68414.m02220 expressed protein
Length = 394
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 393 VSHGREVQLVLA*FLGKTLLQVVVRDYTRVGMNVEHYNQAQDNLVVLRLARRW 235
+ G ++QL +A K L V R + V+++ QAQDNL+ L LA W
Sbjct: 215 LGQGVDIQLGMAIDSSKATLAVKRRLSCEM---VKYWQQAQDNLMNLPLANGW 264
>At5g13140.1 68418.m01505 expressed protein
Length = 267
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = +3
Query: 345 YPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQ 485
YP + P PT P P + + + P + + W+P P+
Sbjct: 213 YPDLPPLPTLPPFPSFPFPSLPFGNPNLALPAFDWKNPVTWIPYLPR 259
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 330 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 437
P+ S P +TP P P TP G S PYV P
Sbjct: 220 PSVPSPPDVTPTPPTPPSVPTPSG-----SPPYVPP 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,369
Number of Sequences: 28952
Number of extensions: 267801
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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