Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20022
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    73   2e-14
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    71   9e-14
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   3.2  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   4.2  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   5.5  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    24   9.7  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 72.5 bits (170), Expect = 2e-14
 Identities = 43/112 (38%), Positives = 57/112 (50%)
 Frame = +2

Query: 2   GTRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPG 181
           G RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY++ K      
Sbjct: 5   GHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV---- 60

Query: 182 GPRGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
             RG K +     G    P      VRA+F  NLPA+  G  +RVMLYPS I
Sbjct: 61  --RGSKIRV--IWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 70.5 bits (165), Expect = 9e-14
 Identities = 42/112 (37%), Positives = 58/112 (51%)
 Frame = +2

Query: 2   GTRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPG 181
           G RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY++ K  P+  
Sbjct: 5   GHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--PV-- 60

Query: 182 GPRGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
             RG K +     G    P      VRA+F  NLP +  G  +RVMLYPS +
Sbjct: 61  --RGSKIRV--IWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 226 LPQIARSLVFFATGTSGNWC-PLLSSV 149
           LP     +V+F TG  G WC  +LSSV
Sbjct: 478 LPVTVFVVVYFNTGLKGIWCGMILSSV 504


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 183 VPVAKKTKLRAIWGKVTRPHGNSGVSEPSSSLTSLPRLWD 302
           VP AKK     + G V   HG        +SLT LP++ D
Sbjct: 282 VPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVD 321


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 63  TRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFPEVPVAKKT 203
           TRT L   L    TV+     + +  +   +  R    PEV + KKT
Sbjct: 355 TRTHLGGILNAGNTVLAYHLAVTNFNNEVYDTLREDSIPEVVIVKKT 401


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 80  LKVEGAKDRNDAVFYAGKH---CVY 145
           +K +  K +  ++FYAGKH   CVY
Sbjct: 66  IKEKTEKTKLSSLFYAGKHEYFCVY 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,183
Number of Sequences: 5004
Number of extensions: 31464
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)