Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20022
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 91 4e-19
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 89 1e-18
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 72 1e-13
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 31 0.25
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 30 0.76
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851... 29 1.3
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 1.3
09_04_0310 + 16578679-16580936,16581027-16581294 28 2.3
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363... 28 2.3
04_04_1576 - 34551095-34552645 27 4.1
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 27 7.1
01_05_0623 - 23768426-23768794 27 7.1
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 26 9.4
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 26 9.4
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 90.6 bits (215), Expect = 4e-19
Identities = 46/110 (41%), Positives = 64/110 (58%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GGT 67
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
+ C G+ P VRAKFKSNLP +MG ++RV +YPS I
Sbjct: 68 NYR-----CIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 89.0 bits (211), Expect = 1e-18
Identities = 45/110 (40%), Positives = 63/110 (57%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK ++
Sbjct: 10 RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
+ C G+ P VRAKF+SNLP +MG ++RV +YPS I
Sbjct: 64 --NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 72.1 bits (169), Expect = 1e-13
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK ++
Sbjct: 10 RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAM 298
+ C G+ P VRAKF+SNLP +M
Sbjct: 64 --NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 307 SVSHSLGREVRLELGSDTPELPCGRVTLPQIARSLVFFATGTSGNWCPLLSSVHIDAMLA 128
++ ++G +V LG+ ++ CGR + FFA G+WC LL+ ++I + A
Sbjct: 137 NIGSAIGTQVNKFLGT-LQDVSCGRDLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCA 195
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 29.9 bits (64), Expect = 0.76
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = -3
Query: 237 GGSPCPR*HAAWFFLPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCW 58
GGSP P +P+ PPG LA + Q L R+FA T A SC
Sbjct: 81 GGSPFP--------VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCV 132
Query: 57 LRRPR 43
+RR R
Sbjct: 133 MRRIR 137
>09_04_0701 +
19583386-19583554,19584290-19584441,19585123-19585181,
19585319-19585344,19585407-19585758,19586184-19586667
Length = 413
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Frame = +3
Query: 9 GCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFPEVP 188
G T Q I A++ + P + R++ + + + SF+ AS ++ E+R H FP
Sbjct: 280 GMTSHAVQQTIPSSMASNPQPPATRRVRP-RALSITSFIAASSSA---EIRAPHDFPLTE 335
Query: 189 VAKKTKLRAIWGKVTRPHGNSGVSEPSSSL---TSLPRLW 299
A T G H N S S + T P W
Sbjct: 336 TASTTNGNIRNGVGAPRHANQSYSWSSETFWPQTGEPHWW 375
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 331 GRIQHHSYSVSHSLGREVRLE 269
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>09_04_0310 + 16578679-16580936,16581027-16581294
Length = 841
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 289 GREVRLELGSDTPELPCGRVTLPQIARSLV 200
GR VR + GSD +LP G V +P+ R+LV
Sbjct: 199 GRYVRFDKGSDAYDLPDG-VRVPRSTRTLV 227
>03_01_0471 +
3629158-3629185,3630027-3630058,3630272-3630344,
3630745-3630969,3631319-3631789,3632286-3633118
Length = 553
Score = 28.3 bits (60), Expect = 2.3
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +3
Query: 6 RGCTQRPYSQDISVVYATS--TRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFP 179
R ++RP SQ IS +YA S +P R T M S +++M + R H
Sbjct: 340 RPISRRPSSQSISRIYAASGTPNSPNPIRSFTNSTAMSISRSNVDLSNMSSRPRASHLAS 399
Query: 180 EVPVAKKTKLRAIWGKVTRPH-GNSGVSEPSSSLTS 284
+ I + PH +SG + PS ++S
Sbjct: 400 AHSLVGSHLSPPINIRYASPHMSHSGYASPSPHVSS 435
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 155 LCTHRRNACQHKRLHHYGLLLL 90
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 146 VYRAKKRTPIPGGPRGKKNQAACYLGQGDPPTWQL 250
VY A + +PGGP G N AA Q + QL
Sbjct: 492 VYPAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQL 526
>01_05_0623 - 23768426-23768794
Length = 122
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 179 GGPRGKKNQAACYLGQGDPPTWQ 247
GGPR ++ + Y+G P W+
Sbjct: 80 GGPRRRRKEEVAYVGNMTSPAWE 102
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 322 QHHSYSVSHSLGREVRLELG-SDTPELP 242
QH + V LG E+ LE+G D P P
Sbjct: 13 QHQHHLVVRGLGEEIDLEIGPGDDPSFP 40
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 179 GGPRGKKNQAACYLGQGDPPTWQLWRVRA 265
GG + + A + GQ PP WQ VRA
Sbjct: 8 GGEQEAPSVEAAFAGQPPPPWWQQVTVRA 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,400,166
Number of Sequences: 37544
Number of extensions: 257734
Number of successful extensions: 709
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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