Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20022
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0) 91 3e-19
SB_4640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 28 2.3
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24) 28 3.1
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29) 27 7.2
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 26 9.5
SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
Length = 115
Score = 91.1 bits (216), Expect = 3e-19
Identities = 46/104 (44%), Positives = 62/104 (59%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY K + G+KRGLRNQH NT+L+K+EG +R + FY GK +VYRAK +T G
Sbjct: 6 RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK 65
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVM 319
+ K + G+ VRAKF+ NLP +AMG +RV+
Sbjct: 66 KATKLRV--IWGKVTRAHGNSGVVRAKFRHNLPPKAMGATVRVI 107
>SB_4640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 32 TGYKRGLRN---QHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKN 202
T ++R +RN +H NTA E K R + A + + KR I GP G K
Sbjct: 12 TQFERSIRNPVGKHWNTANTVKELTKPRVEIQMGAIIEPITAPKQFKRRAIMDGPLGVKK 71
Query: 203 QAACYLGQGD 232
+ A G GD
Sbjct: 72 RGAVKGGDGD 81
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -2
Query: 211 RSLVFFATGTSGNW-----CPLLSSVHIDAMLASIKDCIITVFCSFNLEESGVLV 62
+++VFF+T N+ L +VHI A+ +K +F SF ESG+LV
Sbjct: 91 KNMVFFSTCACVNYFSKALTKFLPNVHIMALHGKMKSNRHKIFDSFRKLESGILV 145
>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
Length = 687
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 316 HSYSVSHSLGREVRLELGSDTPELPCGRVTLP 221
+SY V H+ G + ++ D LP GRVT P
Sbjct: 91 YSYDVPHTCGPDPKICCQFDFRRLPGGRVTCP 122
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 143 YVYRAKKRTPIPGGPRGKKNQAACYLGQGDPPTW 244
+++ + P GG RGK + + L GD TW
Sbjct: 188 HLHVVRTHMPYGGGKRGKSKKNSSTLDTGDLETW 221
>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
Length = 1239
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 187 GTSGNWCPLLSS-VHIDAMLASIKDCIITVFCSFN 86
G SG L SS V D L+ IKDC+ +FC N
Sbjct: 733 GISGLLAFLKSSRVMSDVELSKIKDCLTRLFCDPN 767
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 170 PIPGGPRGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPA 289
PIP G +GK + + GQ P W V A + ++ A
Sbjct: 1114 PIPTGTKGKFIPSTGHKGQVHPIHWHKGHVTASLEEDMDA 1153
>SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 137 CVYVYRAKKRTPIPGGPRGKKNQAACYLGQGDPPTWQLWRVR 262
C+ VYR K P G +G++ L +G P W + V+
Sbjct: 25 CITVYRRKSTHENPLGIKGQEGNKDGRLSRGLPRKWPIAGVK 66
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 86 VEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKNQAACYLGQGDPPTW 244
VE N+ G ++V R+ P G RGK + + L GD TW
Sbjct: 216 VETVVQLNEQFVLQGNFHLHVVRS--HMPFGAGKRGKSKKNSSTLDTGDLETW 266
>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 175 NWCPLLSSVHIDAMLASIKDCIITVFCSFNLEESGVLVLVA 53
+WCP+ +V + +D +I+ S ++SG + VA
Sbjct: 833 SWCPVTQNVKEHLTVRFQEDVVISAIASQGADQSGTSMYVA 873
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,910
Number of Sequences: 59808
Number of extensions: 276397
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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