Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20022
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   106   6e-24
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    29   1.6  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z54269-2|CAA91019.1|  278|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   3.6  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   3.6  
Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    26   8.4  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  106 bits (254), Expect = 6e-24
 Identities = 55/110 (50%), Positives = 71/110 (64%)
 Frame = +2

Query: 8   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
           RLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+Y+A  +T   G  
Sbjct: 17  RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT 76

Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
              + +A    G+   P      VRAKF  N+P  A+G RIRV+LYPS I
Sbjct: 77  VATRTRA--IWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 196
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 196
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 196
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 196
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 196
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 196
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z54269-2|CAA91019.1|  278|Caenorhabditis elegans Hypothetical
           protein F02C12.2 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 271 ELGSDTPELPCGRVTLPQ-IARSLVFFATGTSGNW 170
           ++GS+T  +PCG    P+ IA+++ F A   S  +
Sbjct: 218 DMGSNTTAIPCGFAGRPEHIAKAIAFLADRNSSEY 252


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +3

Query: 27  YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 167
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +3

Query: 27  YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 167
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 182 GPRGKKNQAACYLGQGDPPTWQLWRVRAKF 271
           G  G  NQ +C  GQG PP   + +++ +F
Sbjct: 25  GCAGCPNQGSCATGQGPPPDADVPKIQDRF 54


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 145 IDAMLASIKDCIITVFCSFNLEESGVLVL 59
           IDAM+    D +++V  S  LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 163 LLSSVHIDAMLASIKDCIITVFCSFNLEESGVLVLVA*TTLISCEYGLCV 14
           L+ S+++  ++ SI  CI+ +F     ++   +VL      ++  YGL V
Sbjct: 10  LVLSINLFGVICSIFSCIMNIFILKKEKKKNEMVLFCFRYFLAAVYGLTV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,045,371
Number of Sequences: 27780
Number of extensions: 191261
Number of successful extensions: 459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)