Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20022
(392 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 83 9e-17
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 83 9e-17
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 81 3e-16
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 81 3e-16
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot... 31 0.21
At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi... 27 6.0
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 26 7.9
At3g04260.1 68416.m00450 SAP domain-containing protein contains ... 26 7.9
At1g63530.1 68414.m07182 hypothetical protein 26 7.9
At1g19715.1 68414.m02461 jacalin lectin family protein similar t... 26 7.9
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 82.6 bits (195), Expect = 9e-17
Identities = 42/110 (38%), Positives = 60/110 (54%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
+ C G+ P VRAKF SNLP ++MG R+RV +YPS I
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 82.6 bits (195), Expect = 9e-17
Identities = 43/110 (39%), Positives = 59/110 (53%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ NT+L++VEG + +Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
+ C G+ P VRAKF SNLP ++MG R+RV +YPS I
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 81.0 bits (191), Expect = 3e-16
Identities = 41/110 (37%), Positives = 60/110 (54%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
+ C G+ P VR+KF SNLP ++MG R+RV +YPS I
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 80.6 bits (190), Expect = 3e-16
Identities = 41/110 (37%), Positives = 60/110 (54%)
Frame = +2
Query: 8 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 188 RGKKNQAACYLGQGDPPTWQLWRVRAKFKSNLPAQAMGHRIRVMLYPSRI 337
+ C G+ P VR+KF SNLP ++MG R+RV +YPS I
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
carota] GI:1911765, lanatoside 15'-O-acetylesterase
[Digitalis lanata] GI:3688284; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family
Length = 379
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 262 SDTPELPCGRVTLPQIARSLVFFATGTSGNWC 167
SDT EL G LPQ + + FF + TSG +C
Sbjct: 45 SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76
>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 300
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 212 TQLGFFCHGDLRELVSSS*LCTHRRNACQHK-RLHHYG 102
T L F + LR + SS TH RN C ++ RL +YG
Sbjct: 120 TALIRFQYERLRRICSSCFRVTHHRNYCPYRPRLPNYG 157
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 65 ENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIP 178
+N L E +++N V Y G + Y +KKR P P
Sbjct: 659 QNLYLGDKEREQEQNAMVLYKGDGALVPYESKKRKPRP 696
>At3g04260.1 68416.m00450 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 913
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 334 PGRIQHHSYSVSHSLGREVRLELGSDTPELPCGRVTLPQIARSLVFFATGTSGN 173
PG H V+H+L + + + S EL G+ LP+ +LV +G+ GN
Sbjct: 106 PGPRSFHGLVVAHALNGDEQGAMHSLRKELGAGQRPLPETMIALVRL-SGSKGN 158
>At1g63530.1 68414.m07182 hypothetical protein
Length = 499
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 171 QFPEVPVAKKTKLRAIWGKVTRPHGNSGVSEPSSSLTS 284
QFP + T A+ V RPH VS P+ T+
Sbjct: 394 QFPSAFSSFSTTYPAVSSSVQRPHETGAVSSPAFGCTA 431
>At1g19715.1 68414.m02461 jacalin lectin family protein similar to
agglutinin [Castanea crenata] GI:25528883; contains Pfam
profile PF01419: Jacalin-like lectin domain
Length = 595
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 62 HENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 187
H N+ ++E + N V A H V R + P P GP
Sbjct: 394 HNNSGTAQIENSPWANKLVLAANGHGEEVDRGVVKEPTPSGP 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,860
Number of Sequences: 28952
Number of extensions: 184391
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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